Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0530
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33...    28   4.3  
At2g28540.1 68415.m03467 expressed protein                             27   7.5  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    27   10.0 
At3g27040.1 68416.m03383 meprin and TRAF homology domain-contain...    27   10.0 
At2g43000.1 68415.m05336 no apical meristem (NAM) family protein...    27   10.0 
At2g38500.1 68415.m04730 expressed protein                             27   10.0 

>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
           nearly identical to SC35-like splicing factor SCL33, 33
           kD [Arabidopsis thaliana] GI:9843659
          Length = 220

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 222 KNTTGPTASLANSNLGSQFRDHRRVPAQSHEPPHSD*RRAGILRS 356
           +N   PT   A    G +FRD RR P + +    S   R G  RS
Sbjct: 114 ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRS 158


>At2g28540.1 68415.m03467 expressed protein 
          Length = 655

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 164 FGGHDFIAGLYLPGAXLIEQEYNRPDSVLSQLQPRIPIS*PQTGSCPKP 310
           FG ++ ++  Y  G   + +    P S      PR P+S P   S P P
Sbjct: 427 FGTYNGLSSCYRRGLDYVTESSTLPSSYKPTSVPRCPVSAPPGFSVPTP 475


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 54  SPSTFPSSFEAHSPYIRPESANILASS 134
           +PS  PSS  A SPY  PES   L  S
Sbjct: 636 TPSPSPSSVGAMSPYCAPESFRSLKPS 662


>At3g27040.1 68416.m03383 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 358

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 520 KKF-WPDKNEL*STDVSETKRDTHRSGRC*F*SVHLQPIRDKYGT 389
           KKF W  KN   S D +    DT ++GRC +  V     RD+Y T
Sbjct: 8   KKFAWVIKN-FNSLDTTRVYSDTFKAGRCKWRLVAYPKRRDRYTT 51


>At2g43000.1 68415.m05336 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 275

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 258 SNLGSQFRDHRRVPAQSHEPP 320
           S+L S    HR V + SHEPP
Sbjct: 195 SSLDSDHTSHRTVDSMSHEPP 215


>At2g38500.1 68415.m04730 expressed protein
          Length = 356

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 289 LWSRNWDPRLELAKDAVGP 233
           +W R+W  R+E A++ +GP
Sbjct: 145 VWVRSWKERMEWAREYIGP 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,310,580
Number of Sequences: 28952
Number of extensions: 310976
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)