Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0529
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0315 + 20803035-20803154,20803235-20804089,20804171-208043...    28   6.5  
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907...    27   8.6  

>01_05_0315 +
           20803035-20803154,20803235-20804089,20804171-20804350,
           20805191-20805286,20805895-20806179
          Length = 511

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 4   PHIERCHIKINL-VSTFFG--YVPIYTESTVKCDINMQNRFFIVNYTDHCLKRF 156
           PH+ER H+K+ +    F G   +P +T+  +K  IN+  R  I+  T    KRF
Sbjct: 311 PHVERLHVKVFVRTQNFLGVFQIPGFTQPPLKF-INL--RHLIMRITFGSAKRF 361


>05_07_0340 +
           29389314-29389627,29389966-29390112,29390654-29390789,
           29391098-29391199,29391801-29391920,29392033-29392113,
           29392578-29392918,29393069-29393314,29394195-29394519,
           29395123-29395356,29395437-29395691
          Length = 766

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 115 FFIVNYTDHCLKRFVVHKLSSKFTDIV 195
           FF+VN+ DH L+  VV+  ++K  D+V
Sbjct: 220 FFLVNHPDHYLRHQVVYN-ANKLADLV 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,306
Number of Sequences: 37544
Number of extensions: 199772
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)