Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0528
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 65 4e-12
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 65 5e-12
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 29 0.29
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 0.87
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 26 2.0
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 3.5
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 4.7
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 4.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 4.7
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 65.3 bits (152), Expect = 4e-12
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +2
Query: 74 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 253
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 254 HDWAHTSAPRGSVKNLAT 307
+G ++ L +
Sbjct: 73 KRLGTLKRAKGKIEELTS 90
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 241 EVLEARLGTHIRAKRKREELSNVLAQMR 324
++ + RLGT RAK K EEL++V+ R
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 64.9 bits (151), Expect = 5e-12
Identities = 32/78 (41%), Positives = 47/78 (60%)
Frame = +2
Query: 74 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 253
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 254 HDWAHTSAPRGSVKNLAT 307
+G ++ L +
Sbjct: 73 KRLGTLKRAKGKIEELTS 90
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 241 EVLEARLGTHIRAKRKREELSNVLAQMR 324
++ + RLGT RAK K EEL++V+ R
Sbjct: 69 KLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 0.29
Identities = 14/42 (33%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Frame = +1
Query: 160 STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEARLGTHIR 276
+TR+C T+S+ EEG+ V+ +KR+ +++L+AR+ ++
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARIKDKVK 969
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 0.87
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 287 SVKNLATCSLR*GRQPPRLITITI 358
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 351 MVMSLGGCLPHLSEHVAKFFTLPLGADVCA 262
+V SL G L + A+FFT PL ++VCA
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCA 573
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 3.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 318 LSEHVAKFFTLPLGADVCAQSCFKNFRARLSFDTLSNSIALFSY*ACPTTSRT 160
+S+ AK L G C+Q +N R+R SF +L + S PT+S T
Sbjct: 1601 VSQWKAKLEALTDGCIKCSQKYGRNSRSRSSFYSLIHESFSRSSEVLPTSSDT 1653
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 4.7
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 231 LSFDTLSNSIALFSY*ACPTTS 166
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 104 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 208
RPA L+ L+T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 219 TLSNSIALFSY*ACPTTSRTKSRTNLECF 133
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,552
Number of Sequences: 5004
Number of extensions: 25059
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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