Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0528
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    71   5e-13
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     69   1e-12
07_03_0078 - 13147741-13148913                                         30   0.64 
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    27   7.8  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 70.5 bits (165), Expect = 5e-13
 Identities = 41/82 (50%), Positives = 48/82 (58%)
 Frame = +2

Query: 8   PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 187
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55

Query: 188 YEKRAMELLKVSKDKRALKFLK 253
           YEKR  ELLKV KDKRALK  K
Sbjct: 56  YEKRITELLKVGKDKRALKVAK 77



 Score = 37.1 bits (82), Expect = 0.006
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +1

Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMR 324
           K +   +V + +LGTH RAK+KREE++ V+ +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 40/82 (48%), Positives = 48/82 (58%)
 Frame = +2

Query: 8   PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 187
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55

Query: 188 YEKRAMELLKVSKDKRALKFLK 253
           YEKR  ELLKV KDKRALK  K
Sbjct: 56  YEKRITELLKVGKDKRALKVAK 77



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = +1

Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMR 324
           K +   +V + +LGTH RAK+KREE++ VL +MR
Sbjct: 68  KDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 111 AGLILMALSVIPLRPADILVVLWPF 37
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +2

Query: 89  KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 253
           +A + + A L+ +    S+  ++LV E +G    EK+ +ELL +  +++  ++LK
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLK 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,444,020
Number of Sequences: 37544
Number of extensions: 168829
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)