Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0528
(415 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 83 1e-16
SB_3539| Best HMM Match : rve (HMM E-Value=5.6e-11) 31 0.28
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.38
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 29 1.5
SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33) 28 3.5
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 4.6
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 6.1
SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 82.6 bits (195), Expect = 1e-16
Identities = 44/78 (56%), Positives = 52/78 (66%)
Frame = +2
Query: 20 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 199
+AVGL+KGHK TK + +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 200 AMELLKVSKDKRALKFLK 253
MELL++ KDKRALKF K
Sbjct: 51 VMELLRIGKDKRALKFCK 68
Score = 42.7 bits (96), Expect = 1e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +1
Query: 256 RLGTHIRAKRKREELSNVLAQMRK 327
RLGTH+R KRKREE+++VLA MRK
Sbjct: 70 RLGTHVRGKRKREEITSVLAAMRK 93
>SB_3539| Best HMM Match : rve (HMM E-Value=5.6e-11)
Length = 519
Score = 31.5 bits (68), Expect = 0.28
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 83 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRALKFLKHD 259
+DK +R+ P +++ + + + V+ ++G A+Y K L ++K R L + D
Sbjct: 190 SDKGLRVDPDKVRAITEMPTITDKAAVKRLLGLAEYLAKFLPHLSDLTKPLRDLTQKEAD 249
Query: 260 WAHTSAPRGSVKNLATCSLR 319
W S R +++NL R
Sbjct: 250 WVWDSPQRTAMENLKAAITR 269
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 31.1 bits (67), Expect = 0.38
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 83 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRALKFLKHD 259
+DK +R+ P +++ + + + V+ ++G AQY K L ++K R L + D
Sbjct: 558 SDKGLRVDPDKVRAITEMTTPTDKAAVQRLLGLAQYLAKFLPHLSDLTKPLRDLTQKEAD 617
Query: 260 WAHTSAPRGSVKNL 301
W S + +++NL
Sbjct: 618 WVWDSPQQTAMENL 631
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 119 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 232
+GL+ K + ++ E GHA Y+K L KVS+++
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 119 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKHDWAHTS 274
+GL+ K R ++ E GH Y+K L KVS+ K A + L H S
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAGHCS 138
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 119 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKHDWAHTS 274
+GL+ + + ++ E GH Y+K L KVS+ K A + L H +
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNT 110
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 158 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKHDWAHTS 274
++ E GH Y+K L KVS+ K A + L H S
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAGHAS 54
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 266 VPNRASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 141
+P +S A L+ P PS ++ R+ R NHG+TW
Sbjct: 771 LPTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812
>SB_50092| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=2.1e-33)
Length = 386
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 179 HAQYEKRAMELLKVSKDKRALKFLKHDWAH 268
HA++ K+ M +L KD + L L+H H
Sbjct: 93 HARFNKKPMNILFPKKDTKYLTILRHPVTH 122
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 27.9 bits (59), Expect = 3.5
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Frame = +2
Query: 26 VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 169
V RKGHK T + G+KGI K R+ +R Q KHS K +R +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168
Query: 170 VVGHAQYEKRAMELLKVSKDK 232
+ H+ E KV K K
Sbjct: 1169 -LEHSSENSSEEEKRKVRKKK 1188
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 104 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 83 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 241
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712
>SB_22285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 221 SKDKRALKFLKHDWAHTSAPRGSVKNLATCSLR 319
S +R +F+KHD+ TS+ R + +L SL+
Sbjct: 70 SIQRRVARFIKHDYHQTSSVRKMMADLGWQSLK 102
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 83 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 241
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 671
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,016,546
Number of Sequences: 59808
Number of extensions: 207353
Number of successful extensions: 558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -