Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0528
(415 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 91 1e-18
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 91 1e-18
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 91 1e-18
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 91 1e-18
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 91 1e-18
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 38 0.010
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 31 2.0
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 31 2.0
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 31 2.0
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 31 2.0
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 31 2.0
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 31 2.0
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 91.5 bits (217), Expect = 1e-18
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +2
Query: 2 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 181
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 182 AQYEKRAMELLKVSKDKRALKFLK 253
A YE+RAMELLKVSKDKRALKF+K
Sbjct: 51 APYERRAMELLKVSKDKRALKFIK 74
Score = 48.8 bits (111), Expect = 7e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMRK 327
K + + ++ R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 91.5 bits (217), Expect = 1e-18
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +2
Query: 2 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 181
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 182 AQYEKRAMELLKVSKDKRALKFLK 253
A YE+RAMELLKVSKDKRALKF+K
Sbjct: 51 APYERRAMELLKVSKDKRALKFIK 74
Score = 48.8 bits (111), Expect = 7e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMRK 327
K + + ++ R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 91.5 bits (217), Expect = 1e-18
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +2
Query: 2 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 181
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 182 AQYEKRAMELLKVSKDKRALKFLK 253
A YE+RAMELLKVSKDKRALKF+K
Sbjct: 51 APYERRAMELLKVSKDKRALKFIK 74
Score = 48.8 bits (111), Expect = 7e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMRK 327
K + + ++ R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 91.5 bits (217), Expect = 1e-18
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +2
Query: 2 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 181
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 182 AQYEKRAMELLKVSKDKRALKFLK 253
A YE+RAMELLKVSKDKRALKF+K
Sbjct: 51 APYERRAMELLKVSKDKRALKFIK 74
Score = 48.8 bits (111), Expect = 7e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMRK 327
K + + ++ R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 91.5 bits (217), Expect = 1e-18
Identities = 49/84 (58%), Positives = 59/84 (70%)
Frame = +2
Query: 2 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 181
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 182 AQYEKRAMELLKVSKDKRALKFLK 253
A YE+RAMELLKVSKDKRALKF+K
Sbjct: 51 APYERRAMELLKVSKDKRALKFIK 74
Score = 48.8 bits (111), Expect = 7e-06
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMRK 327
K + + ++ R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 38.3 bits (85), Expect = 0.010
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSN 306
K + + ++ R+GTHIRAKRKREELSN
Sbjct: 5 KDKRALKFIKKRVGTHIRAKRKREELSN 32
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/14 (92%), Positives = 14/14 (100%)
Frame = +2
Query: 212 LKVSKDKRALKFLK 253
LKVSKDKRALKF+K
Sbjct: 1 LKVSKDKRALKFIK 14
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 56 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E + + ++
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELEGVILELQEQ 312
Query: 236 ALKFLKHDWAHTSAPRGSVKNLAT 307
+ D H +GS K L T
Sbjct: 313 LTGLIPSD--HAPLAQGS-KELTT 333
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 56 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E + + ++
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELEGVILELQEQ 317
Query: 236 ALKFLKHDWAHTSAPRGSVKNLAT 307
+ D H +GS K L T
Sbjct: 318 LTGLIPSD--HAPLAQGS-KELTT 338
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 56 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E + + ++
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELEGVILELQEQ 312
Query: 236 ALKFLKHDWAHTSAPRGSVKNLAT 307
+ D H +GS K L T
Sbjct: 313 LTGLIPSD--HAPLAQGS-KELTT 333
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 56 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E + + ++
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELEGVILELQEQ 317
Query: 236 ALKFLKHDWAHTSAPRGSVKNLAT 307
+ D H +GS K L T
Sbjct: 318 LTGLIPSD--HAPLAQGS-KELTT 338
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 56 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E + + ++
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELEGVILELQEQ 317
Query: 236 ALKFLKHDWAHTSAPRGSVKNLAT 307
+ D H +GS K L T
Sbjct: 318 LTGLIPSD--HAPLAQGS-KELTT 338
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/84 (26%), Positives = 41/84 (48%)
Frame = +2
Query: 56 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E + + ++
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELEGVILELQEQ 352
Query: 236 ALKFLKHDWAHTSAPRGSVKNLAT 307
+ D H +GS K L T
Sbjct: 353 LTGLIPSD--HAPLAQGS-KELTT 373
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,027,436
Number of Sequences: 237096
Number of extensions: 897790
Number of successful extensions: 1934
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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