Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0528
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    74   4e-14
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   1.3  
AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical ...    29   1.3  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   2.3  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   2.3  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   7.1  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 38/78 (48%), Positives = 53/78 (67%)
 Frame = +2

Query: 20  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 199
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 200 AMELLKVSKDKRALKFLK 253
            +E+L++SKDKRALKFLK
Sbjct: 59  VLEMLRISKDKRALKFLK 76



 Score = 37.9 bits (84), Expect = 0.003
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMRK 327
           K +   + L+ R+GTH RAK KREEL NV+   RK
Sbjct: 67  KDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 104 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 241
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 104 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 241
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 101 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical
           protein C24G6.8 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 167 EVVGHAQYEKRAMELLKVSKDKRALKFLKHDWAHTSAPRGS 289
           ++V   Q  ++ M+L KV+KD     +L  D  +T  P GS
Sbjct: 253 KIVVKGQSTEQLMDLCKVAKDAGCYYYLVQDAGYTQIPAGS 293


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 116 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 116 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 235
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 149 VRDLVREVVGHAQYEKRAMELLKV 220
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 158 LVREVVGHAQYEKRAMELLKV 220
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,857,022
Number of Sequences: 27780
Number of extensions: 142473
Number of successful extensions: 338
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)