Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0528
(415 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 64 4e-11
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 63 6e-11
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 63 8e-11
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 53 9e-08
At2g47115.1 68415.m05884 expressed protein 29 1.6
At1g10530.1 68414.m01186 expressed protein 28 2.2
At1g61030.1 68414.m06871 expressed protein 27 3.8
At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containi... 27 6.6
At1g34590.1 68414.m04299 hypothetical protein 27 6.6
At3g19930.1 68416.m02523 sugar transport protein (STP4) identica... 26 8.7
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 64.1 bits (149), Expect = 4e-11
Identities = 36/76 (47%), Positives = 45/76 (59%)
Frame = +2
Query: 26 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 205
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 206 ELLKVSKDKRALKFLK 253
ELLKV KDKRALK K
Sbjct: 62 ELLKVGKDKRALKVAK 77
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMR 324
K + +V + +LGTH RAKRKREE+S+VL +MR
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 63.3 bits (147), Expect = 6e-11
Identities = 37/76 (48%), Positives = 44/76 (57%)
Frame = +2
Query: 26 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 205
VGL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 206 ELLKVSKDKRALKFLK 253
ELLKV KDKRALK K
Sbjct: 62 ELLKVGKDKRALKVAK 77
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMR 324
K + +V + +LGTH RAKRKREE+S+VL +MR
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 62.9 bits (146), Expect = 8e-11
Identities = 37/76 (48%), Positives = 44/76 (57%)
Frame = +2
Query: 26 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 205
VGL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 206 ELLKVSKDKRALKFLK 253
ELLKV KDKRALK K
Sbjct: 58 ELLKVGKDKRALKVAK 73
Score = 40.7 bits (91), Expect = 4e-04
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 223 KRQACSEVLEARLGTHIRAKRKREELSNVLAQMR 324
K + +V + +LGTH RAKRKREE+S+VL +MR
Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 52.8 bits (121), Expect = 9e-08
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = +2
Query: 26 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 205
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 206 ELLKVSKDK 232
ELLKV+K K
Sbjct: 62 ELLKVAKRK 70
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = +1
Query: 241 EVLEARLGTHIRAKRKREELSNVLAQMR 324
+V + +LGTH RAKRKREE+S+VL +MR
Sbjct: 65 KVAKRKLGTHKRAKRKREEMSSVLRKMR 92
>At2g47115.1 68415.m05884 expressed protein
Length = 300
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -2
Query: 369 IYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSCFKNFRARL 229
IY M +V S+ GCL HL E TL DV + FR RL
Sbjct: 112 IYFAMGIVASVYGCLIHLKE-----LTLETDEDVVVEKVGDEFRRRL 153
>At1g10530.1 68414.m01186 expressed protein
Length = 166
Score = 28.3 bits (60), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Frame = +2
Query: 107 PARLKGLQTKHSKFVR----DLVRE----VVGHAQYEKRAMELLKVSKDKRALKFLKHDW 262
PA KG K K VR L+R V+GHA + E++KV ++K++ K KH
Sbjct: 57 PATEKGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLREKKSAKTKKHQI 116
Query: 263 AHTSAPR 283
T+ +
Sbjct: 117 EKTTTAK 123
>At1g61030.1 68414.m06871 expressed protein
Length = 840
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 324 PHLSEHVAKFFTLPLGADVCAQSCFKNFRARLSFDTLSNSIALFSY*ACPTTSRTKSRTN 145
PHL+ V K F + +D C+ + F + ++ LS + S L C TT + S+++
Sbjct: 412 PHLASAVKKGFVTIISSDTCSTTGFSSIKS-LSVSKRNQSAFLV---GCSTTPKPGSQSS 467
Query: 144 L 142
+
Sbjct: 468 V 468
>At3g61520.1 68416.m06890 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 766
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 137 HSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKHDWAHTSAPRGSVKNLATCS 313
HS+F+R +V + + + E + V K K +HDWA + + V + ++ S
Sbjct: 19 HSRFLRRFSYDVDPRPEIKLESQEFVVVKFVKTLQKTPQHDWASSESLSALVVSSSSAS 77
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 5 APRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 115
AP E A GH++ + A + G+TD+A + PA+
Sbjct: 775 APALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At3g19930.1 68416.m02523 sugar transport protein (STP4) identical
to GB:S25009 GI:16524 from [Arabidopsis thaliana]
Length = 514
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/62 (17%), Positives = 33/62 (53%)
Frame = +2
Query: 125 LQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKHDWAHTSAPRGSVKNLA 304
++ +++ +++++ + G + ++ +L+ S++ K +KH W + PR + +
Sbjct: 229 IERGYTEEAKEMLQSIRGTNEVDEEFQDLIDASEES---KQVKHPWKNIMLPRYRPQLIM 285
Query: 305 TC 310
TC
Sbjct: 286 TC 287
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,494,675
Number of Sequences: 28952
Number of extensions: 134363
Number of successful extensions: 345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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