Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0527
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    97   6e-21
At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate mu...    25   5.3  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 50/108 (46%), Positives = 64/108 (59%)
 Frame = +2

Query: 293 SPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLT 472
           +P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    L  T
Sbjct: 110 APAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVAT 169

Query: 473 ILLGILFYYFTSYEYIEASFTIADRFMGSLFS*PQGFMGIHVIIGTLF 616
           +LL ++F  F   EY +A FTI+D   GS F    GF G HVIIGTLF
Sbjct: 170 VLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLF 217


>At4g38370.1 68417.m05425 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 225

 Score = 25.4 bits (53), Expect(2) = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 267 FELFSIEDYPQILKLEEYDP 326
           FEL S + YP+I  L+E DP
Sbjct: 116 FELKSHDKYPEIWALDEKDP 135



 Score = 21.0 bits (42), Expect(2) = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 300 ILKLEEYDPLQELHHLIHS 356
           IL +   DPLQ L ++ HS
Sbjct: 168 ILVVSHGDPLQMLQNVFHS 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,687,590
Number of Sequences: 28952
Number of extensions: 145703
Number of successful extensions: 225
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)