Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0526
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   1.8  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   5.5  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   5.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.2  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 105 TNYPEEPVRVGEIVV 149
           T YP++P+R G+I++
Sbjct: 346 TTYPKQPLRFGKILL 360


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -3

Query: 249 YCHLWLRTLLCH 214
           +C+LW+  L+C+
Sbjct: 175 FCYLWVLILICN 186


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = -3

Query: 267 PLSSSYYCHLWLRTLLCH-CSFHVVSILC 184
           P    Y    WL  + CH C  H + ++C
Sbjct: 99  PSGVVYKIGYWLHQI-CHICELHTIFLVC 126


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 154  LKTTISPTRTGSSG*LVKNSKSP 86
            LK T  P  +GSSG     SKSP
Sbjct: 1106 LKGTAVPPPSGSSGPGSTGSKSP 1128


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 270 KPLSSSYYCHLWLRTLLCHCSFHVVSI 190
           KPL + Y C     +L+C  ++ + ++
Sbjct: 174 KPLKAGYICTKTRASLICLLAWFIAAL 200


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 270 KPLSSSYYCHLWLRTLLCHCSFHVVSI 190
           KPL + Y C     +L+C  ++ + ++
Sbjct: 174 KPLKAGYICTKTRASLICLLAWFIAAL 200


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 513 FTSHIISAKVCIFLLSS 463
           FTSH I   V IF +S+
Sbjct: 241 FTSHFIFIVVSIFYMSA 257


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/29 (24%), Positives = 12/29 (41%)
 Frame = -3

Query: 267 PLSSSYYCHLWLRTLLCHCSFHVVSILCE 181
           P  +   CH  + +  C C    +  +CE
Sbjct: 230 PCQNGGTCHDLVNSFSCSCPSGTLGYICE 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,039
Number of Sequences: 336
Number of extensions: 3189
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)