Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0526
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    85   5e-18
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   1.4  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   2.5  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   3.3  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.8  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   5.8  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.6  

>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 52/108 (48%), Positives = 65/108 (60%), Gaps = 17/108 (15%)
 Frame = +3

Query: 12  LMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTN----YPE-------------EPVRVGE 140
           L  VT  ESP+VVVLS SMEP+F RGDLLFL N    + E              PV +G+
Sbjct: 30  LSFVTDCESPVVVVLSESMEPSFQRGDLLFLDNRNPSFDEAKVPSVFEKIIYGSPVGIGD 89

Query: 141 IVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSLMTEACMPRA 284
           IVV+ +  R IPIVHRV+KL+E  N T   +TKGDNN +   A  P++
Sbjct: 90  IVVYSLPDRPIPIVHRVVKLYESENQT-HLITKGDNNKIDDVAMFPKS 136



 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +2

Query: 254 LDDRGLYAQGQLWLTKKD-VVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHR 430
           +DD  ++ +   +L +++ ++G  RG+ PY+GM+TI++ +YP  K+ +L  L +  L+ +
Sbjct: 127 IDDVAMFPKSINYLDRENHILGVVRGYFPYLGMITIWLTDYPILKYIMLGGLGLLTLIQK 186

Query: 431 E*Q 439
           E Q
Sbjct: 187 EEQ 189


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 408 ARXASTA-NLNLGYSFIYMVTIPTYGKNPLARPTTSFLVSHSWPWAYKPLSSSY 250
           +R A  A N N GYS++   + P    NPL    T+ L +   P A   + S Y
Sbjct: 96  SRDAPAAINNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMPSGY 149


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 553 H*RDLHLIIRIKYIHEPYNLRKSMYIPALFPTLQILALLSLPVY*YINCK 404
           H  DL+L+    +  + +N     ++P  FPTL   A +   +Y Y  CK
Sbjct: 301 HANDLYLLFLSLFRTQSFNDSMEHWVPVCFPTLNPDAYIY--IYSYFLCK 348


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 252 SLMTEACMPRANCGSLKKMWLAVQEDFCHMLEWS 353
           SL+  AC  R +  ++   W    E F ++L W+
Sbjct: 165 SLLINACKDRLSSSAISLQWKKTLECFTNLLGWN 198


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 90  DLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVHRV 191
           DLL   N PE P+ + ++ V K+E  DI +V  V
Sbjct: 61  DLLAKINDPEHPLTLAQLSVVKLE--DIEVVDNV 92


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 273 YKPLSSSYYCHLW 235
           Y PLS+SYYC L+
Sbjct: 42  YSPLSASYYCLLY 54


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 526 RIKYIHEPYNLRKSMYIPALFPTLQILALL 437
           +I +I E  ++ +   IPA+FP+L+ L L+
Sbjct: 706 KICFIEEAADVLEGPIIPAVFPSLEQLVLI 735


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 291 GSLKKMWLAVQE 326
           GSLKK+W+ VQE
Sbjct: 485 GSLKKVWIVVQE 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,094
Number of Sequences: 5004
Number of extensions: 52094
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)