Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0526
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1125 - 9268507-9268557,9268771-9268828,9268920-9269007,926... 118 4e-27
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473... 109 1e-24
02_05_1306 - 35595177-35595218,35595591-35595636,35595687-355957... 81 6e-16
03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865 66 1e-11
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 33 0.21
11_05_0109 + 19126849-19126917,19129883-19130620 31 0.48
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 30 1.5
11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872 29 2.5
02_02_0275 + 8478374-8478706 29 3.4
01_07_0138 - 41383304-41384458 29 3.4
02_05_0243 - 27124559-27124864,27126922-27126990,27127741-271279... 28 4.4
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 27 7.7
08_02_1413 + 26897815-26899299 27 7.7
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 27 7.7
>06_01_1125 -
9268507-9268557,9268771-9268828,9268920-9269007,
9269162-9269207,9269304-9269339,9269438-9269509,
9269946-9270058,9271626-9271740,9273728-9273772
Length = 207
Score = 118 bits (283), Expect = 4e-27
Identities = 56/83 (67%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Frame = +3
Query: 6 RGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVH 185
+GL+VVTGSESP+VVVLSGSMEP F RGD+LFL + ++P+R GEIVVF V+GR+IPIVH
Sbjct: 65 KGLIVVTGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRTGEIVVFNVDGREIPIVH 123
Query: 186 RVLKLHEK-NNGTVKFLTKGDNN 251
RV+K+HE+ + V LTKGDNN
Sbjct: 124 RVIKVHERQESAEVDILTKGDNN 146
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +2
Query: 257 DDRGLYAQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 433
DDR LYA GQLWL + ++GRA GFLPYVG VTI M E P K+ ++ L + V+ +E
Sbjct: 149 DDRLLYAHGQLWLQQHHIMGRAVGFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE 207
>05_03_0370 +
13144612-13144639,13144749-13145260,13146995-13147327,
13147690-13147699,13149704-13149816,13151187-13151258,
13151397-13151432,13151552-13151597,13151726-13151828,
13151916-13151973,13152231-13152281
Length = 453
Score = 109 bits (263), Expect = 1e-24
Identities = 55/88 (62%), Positives = 69/88 (78%), Gaps = 6/88 (6%)
Frame = +3
Query: 6 RGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVH 185
+GLMV TGSESP+VVVLSGSMEP F RGD+LFL + ++P+R GEIVVF ++GR+IPIVH
Sbjct: 306 KGLMVATGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRTGEIVVFNIDGREIPIVH 364
Query: 186 RVLKLHEK-NNGTVKFLTK-----GDNN 251
RV+K+HE+ + V LTK GDNN
Sbjct: 365 RVIKVHEREESAEVDILTKVNCFSGDNN 392
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +2
Query: 257 DDRGLYAQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 433
DDR LYA GQLWL + ++GRA GFLPYVG VTI M E P K+ ++ L + V+ +E
Sbjct: 395 DDRLLYAHGQLWLHQHHIMGRAVGFLPYVGWVTIIMTEKPFIKYLLIGALGLLVITSKE 453
>02_05_1306 -
35595177-35595218,35595591-35595636,35595687-35595778,
35595945-35596013,35596153-35596265,35596503-35596542
Length = 133
Score = 81.0 bits (191), Expect = 6e-16
Identities = 39/65 (60%), Positives = 53/65 (81%)
Frame = +3
Query: 6 RGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVH 185
+GL+++TGSESP+VVVLS SME F RGD+LFL + P+R G+IVVF +GR+IPIVH
Sbjct: 25 KGLIIMTGSESPLVVVLSESMELGFERGDILFL-QMSKHPIRTGDIVVFN-DGREIPIVH 82
Query: 186 RVLKL 200
RV+++
Sbjct: 83 RVIEV 87
>03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865
Length = 648
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Frame = +3
Query: 12 LMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYP-----EEPVRVGEIVVFKVEGRDIP 176
L++ + + VV+SGSMEP RGD+L + ++ +R G+IV+F E +P
Sbjct: 43 LLLGKATGTTATVVVSGSMEPGIRRGDMLIVRERRNDGDGDDNIRAGDIVLFSTELHPVP 102
Query: 177 IVHRVLKLHEKNNGTVK-FLTKGDNNSLMTEACMPRANCGSLKKM 308
IVHRV++LHE+++G + LTKG N L + + + R+ C +
Sbjct: 103 IVHRVIELHERHDGGARQMLTKG-ANILHSLSTLHRSKCAQFTNL 146
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +3
Query: 237 KGDNNSLMTEACMPRANCGSLKKMWLAVQEDFCHMLEWSPYI*MNILSL 383
K ++NSL +A R NC SL +W A CH W+ + N LSL
Sbjct: 20 KKNHNSLSGKAPPTRGNCDSLPPVWNAKSASECH---WTRRLTSNYLSL 65
>11_05_0109 + 19126849-19126917,19129883-19130620
Length = 268
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2
Query: 337 WQKSSCTANHIFFSEPQLALGIQASVIKLLLSPLVKNFTVPLFFS 203
W K T H +FS P + + + A++I LL + + +TV F++
Sbjct: 223 WNKWRATLMHTYFSNPWVFISLLAAIILLLATLMQTIYTVVPFYN 267
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -2
Query: 535 LIIRIKYIHEPYNLRKSMYIPALFPTLQIL 446
+++R++Y+ P+N +K++YIP L +L
Sbjct: 144 IMVRLEYLSSPFNEKKNLYIPICSYALLLL 173
>11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872
Length = 453
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 337 WQKSSCTANHIFFSEPQLALGIQASVIKLLLSPLVKNFTVPLFF 206
W K + H +FS P + + + A++I L+ + L +TV F+
Sbjct: 407 WNKWRASLIHTYFSNPWVFISLVAAIILLVATLLQTAYTVVPFY 450
>02_02_0275 + 8478374-8478706
Length = 110
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 12 LMVVTGSESPIVVVLSGSMEPAFH 83
L++VTGS SP+ V +SG P H
Sbjct: 15 LLLVTGSSSPVSVSVSGDRCPVLH 38
>01_07_0138 - 41383304-41384458
Length = 384
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +1
Query: 397 GXSCNLCISTQGVTEALRSEVLGREQEY---TYFC 492
G SC+LC+ST+G + LR+ + Y Y+C
Sbjct: 311 GSSCSLCVSTRGFHDDLRNRLFFAWPSYESGKYYC 345
>02_05_0243 -
27124559-27124864,27126922-27126990,27127741-27127926,
27128572-27129093
Length = 360
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 120 EPVRVGEIVVFKVEGRDIPIVHRVLKLHEK-NNG 218
+P R G +V V G+ +P+ +LH K NNG
Sbjct: 265 QPRRSGRVVTVSVVGKQVPLYGAGAELHSKPNNG 298
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 396 STANLNLGYSFIYMVTIPTYGKNPLARPTTSF 301
ST+ N G S + TIPT+G P +++F
Sbjct: 321 STSAFNFGSSPSFGQTIPTFGSTPFGTTSSTF 352
>08_02_1413 + 26897815-26899299
Length = 494
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 337 WQKSSCTANHIFFSEPQLALGIQASVIKLLLSPLVKNFTV 218
W + H +FS P ++ A+V+ LLL+ + +TV
Sbjct: 448 WNRHRAVLAHDYFSNPWTSMSAAAAVLLLLLTVVQTVYTV 487
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -3
Query: 381 NLGYSFIYMVTIPTYGKNPLARPTTSFLVSHSWPWAYKPLSSSYYCHLWLRTL 223
N Y + + I Y +PL P + + + + +++YCH+ LR L
Sbjct: 191 NCAYYWTFGAYIAYYCNHPLYTPVSELQMKIGFGFGILCQIANFYCHILLRNL 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,803
Number of Sequences: 37544
Number of extensions: 316924
Number of successful extensions: 769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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