Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0526
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)              158   3e-39
SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)          31   0.85 
SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          28   6.0  
SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3)              27   7.9  
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     27   7.9  

>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score =  158 bits (383), Expect = 3e-39
 Identities = 73/84 (86%), Positives = 80/84 (95%)
 Frame = +3

Query: 6   RGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVH 185
           +GLMVVTGSESPIVVVLSGSMEPAF RGDLLFLTNY E+P+RVGEIVVFKVEGR+IPIVH
Sbjct: 37  KGLMVVTGSESPIVVVLSGSMEPAFQRGDLLFLTNYKEDPIRVGEIVVFKVEGREIPIVH 96

Query: 186 RVLKLHEKNNGTVKFLTKGDNNSL 257
           RVLK+HEK NG +KFLTKGDNNS+
Sbjct: 97  RVLKVHEKENGDIKFLTKGDNNSV 120



 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 38/44 (86%), Positives = 41/44 (93%)
 Frame = +2

Query: 254 LDDRGLYAQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFK 385
           +DDRGLYA GQLWL KKDVVGRARGF+PYVGMVTI MN+YPKFK
Sbjct: 120 VDDRGLYAPGQLWLAKKDVVGRARGFVPYVGMVTILMNDYPKFK 163


>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
          Length = 472

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
 Frame = +3

Query: 12  LMVVTGS--ESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVE---GRDIP 176
           L VV GS    P++ +L  + +PA H   +   T    + +  G+ VV + E        
Sbjct: 131 LTVVLGSIFSQPVICLLVVTEQPAIHYTTMAH-TAVLADSITSGKCVVVQYEHAMNAQHT 189

Query: 177 IVHRVLKLHEKNNGTVKFLTKGDNNSLMTEACMPRANCGSLKK 305
           I     + HE  +GT +  T G N+            C +LK+
Sbjct: 190 ITRHTDRTHEHTDGTHEHATHGRNSRRRNTRTRSTRTCNTLKR 232


>SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 412 LCISTQGVTEALRSEVLGREQEYTYFCGDY 501
           LCI  +   E  R   LG + E   +CGDY
Sbjct: 772 LCIPAEKPIEEWRPSELGHKLEEVVYCGDY 801


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 168 DIPIVHRVLKLHEKNNGTVKFLTKGDNNSLMTEACMPRANCGSLKKMWLAVQ 323
           D+   + VL   ++   T+K + K  +    +    PRANC S+    LA Q
Sbjct: 17  DLASFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPRANCASIASETLAQQ 68


>SB_10572| Best HMM Match : Glyco_hydro_12 (HMM E-Value=3)
          Length = 294

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 342 TYGKNPLARPTTSFLVSHSWP-WAYKPLSSSYYC 244
           T+  NP+      FL+S  WP W    +++ + C
Sbjct: 197 TWDNNPILPGVPKFLISGGWPMWCGNEINNEHQC 230


>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 473

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -2

Query: 205 SCSFNTL*TIGISRPSTLKTTISPTRTGSSG*LVKNSKSPL*KAGSILPDSTTTIGLSLP 26
           S S+NT  T      ST  T ISP+  G+   LV +    +    + L  S +T  LS  
Sbjct: 70  SVSYNTTLTPAPDVASTAPTAISPSSVGNMTTLVSSVNLTISSLSTTLIPSISTFILSYN 129

Query: 25  VTTI 14
            T I
Sbjct: 130 TTVI 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,765
Number of Sequences: 59808
Number of extensions: 396690
Number of successful extensions: 1154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)