Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0526
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical ...   135   2e-32
Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ...    29   2.3  
U88166-2|AAO44911.1|  118|Caenorhabditis elegans Hypothetical pr...    29   3.0  
L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF000193-2|AAB52889.1|  184|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC024812-3|AAF59551.1|  183|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.5 protein.
          Length = 183

 Score =  135 bits (326), Expect = 2e-32
 Identities = 61/84 (72%), Positives = 74/84 (88%)
 Frame = +3

Query: 6   RGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVH 185
           +G+MV+TGS+SP+VVVLSGSMEPAF+RGDLL LTN  E+PVRVG+I VFKVEGR+IPIVH
Sbjct: 40  KGMMVITGSDSPVVVVLSGSMEPAFYRGDLLLLTNDLEDPVRVGDITVFKVEGREIPIVH 99

Query: 186 RVLKLHEKNNGTVKFLTKGDNNSL 257
           RV+K+HEK+    K LTKGDNN +
Sbjct: 100 RVIKVHEKSADNTKILTKGDNNQV 123



 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 48/91 (52%), Positives = 64/91 (70%)
 Frame = +2

Query: 161 GPGYPDCSQSIETT*KEQWHSKVLNQR*Q**LDDRGLYAQGQLWLTKKDVVGRARGFLPY 340
           G   P   + I+   K   ++K+L +     +DDRGLYA GQLWL++ DVVGR +G LPY
Sbjct: 92  GREIPIVHRVIKVHEKSADNTKILTKGDNNQVDDRGLYAPGQLWLSRTDVVGRTKGLLPY 151

Query: 341 VGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 433
           VGMVTI MN+YPK K+AVLA L ++VL+H+E
Sbjct: 152 VGMVTIIMNDYPKLKYAVLAFLGLFVLLHKE 182


>Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical
           protein W04G5.9 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = -2

Query: 163 PSTLKTTISP--TRTGSSG*LVKNSKSPL------*KAGSILPDSTTTIGLSLPVTTIKP 8
           PSTLKTT  P  T T S+  +     S L       KA +    STT    S P TT+ P
Sbjct: 104 PSTLKTTTKPVITATRSTARITTTKASTLEPPEAPTKASTARTISTTETTTSPPTTTVTP 163

Query: 7   R 5
           R
Sbjct: 164 R 164


>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
            protein H06I04.5 protein.
          Length = 1138

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
 Frame = -3

Query: 363  IYMVTIPTYGKNP-LARPTTSFLVSHSWPW------AYKPLSSSYYCHLWLRTLLCHCS 208
            +Y V I  Y KN    + T   L+  +WP       AY  L    +C  + + +L HCS
Sbjct: 932  LYTVEITNYRKNKGEQKKTVDILLYSAWPEHGAPQEAYPALEILKFCETYKKNVLVHCS 990


>U88166-2|AAO44911.1|  118|Caenorhabditis elegans Hypothetical
           protein M01A12.3 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 373 IFIHIYGDHSNIWQKSSC 320
           +FIH++GDH N+ +   C
Sbjct: 32  VFIHLFGDHLNVLEDDEC 49


>L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical
           protein ZC21.9 protein.
          Length = 262

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 373 IFIHIYGDHSNIWQKSSCTANHIFFS-EPQLALG 275
           IF+ ++GD SN   KSS T   + F+ EP  A G
Sbjct: 168 IFVEVHGDDSNTTTKSSPTLEFVQFTLEPPSADG 201


>AF000193-2|AAB52889.1|  184|Caenorhabditis elegans Hypothetical
           protein T20B6.1 protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
 Frame = -3

Query: 363 IYMVTIPTYGKNPLARPTTSFLVSHSWP------WAYKPLSSSYYCHLWLRTLLCHCS 208
           +Y V I    K    + T   L    WP       AY  L    +C  + + +L HCS
Sbjct: 102 LYTVEITNSKKKDAPKKTVDILYFSGWPDHGAPQEAYPALEMLKFCESYKKNVLVHCS 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,815
Number of Sequences: 27780
Number of extensions: 294150
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)