Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0526
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52600.1 68414.m05938 signal peptidase, putative similar to S...   120   5e-28
At3g15710.1 68416.m01991 signal peptidase, putative similar to S...   110   7e-25
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ...    30   0.92 
At1g51320.1 68414.m05771 F-box family protein (FBX11) contains F...    29   2.1  
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf...    27   6.5  
At1g75670.2 68414.m08791 expressed protein similar to DNA-depend...    27   6.5  
At1g75670.1 68414.m08790 expressed protein similar to DNA-depend...    27   6.5  
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ...    27   8.6  
At2g28110.1 68415.m03415 exostosin family protein contains 1 tra...    27   8.6  
At1g61330.1 68414.m06912 F-box family protein contains Pfam prof...    27   8.6  

>At1g52600.1 68414.m05938 signal peptidase, putative similar to
           SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC
           3.4.-.-) {Canis familiaris}; contains Pfam profile
           PF00461: Signal peptidase I
          Length = 180

 Score =  120 bits (290), Expect = 5e-28
 Identities = 58/83 (69%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
 Frame = +3

Query: 6   RGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVH 185
           + LM VTGSESP+VVVLSGSMEP F RGD+LFL +  ++P+R GEIVVF V+GRDIPIVH
Sbjct: 38  KALMCVTGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGRDIPIVH 96

Query: 186 RVLKLHEK-NNGTVKFLTKGDNN 251
           RV+K+HE+ N G V  LTKGDNN
Sbjct: 97  RVIKVHERENTGEVDVLTKGDNN 119



 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 30/59 (50%), Positives = 41/59 (69%)
 Frame = +2

Query: 257 DDRGLYAQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 433
           DDR LYA+GQLWL +  ++GRA GFLPYVG VTI M E P  K+ ++  L + V+  ++
Sbjct: 122 DDRLLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180


>At3g15710.1 68416.m01991 signal peptidase, putative similar to
           SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC
           3.4.-.-) {Canis familiaris}; contains Pfam profile:
           PF00461 signal peptidase I
          Length = 180

 Score =  110 bits (264), Expect = 7e-25
 Identities = 53/85 (62%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +3

Query: 6   RGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVEGRDIPIVH 185
           + L+ VTGSESP+VVVLS SMEP F RGD+LFL    +EP+R GEIVVF V+GR+IPIVH
Sbjct: 38  KALICVTGSESPVVVVLSESMEPGFQRGDILFL-RMTDEPIRAGEIVVFSVDGREIPIVH 96

Query: 186 RVLKLHEK-NNGTVKFLTKGDNNSL 257
           R +K+HE+ +   V  LTKGDNN +
Sbjct: 97  RAIKVHERGDTKAVDVLTKGDNNDI 121



 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = +2

Query: 254 LDDRGLYAQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE 433
           +DD GLYA+GQLWL +  ++GRA GFLPYVG VTI M E P  K+ ++  L + V+  ++
Sbjct: 121 IDDIGLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180


>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 469

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = -2

Query: 379 LRIFIH-IYGDHSNIWQKSSCT-ANHIFFSEPQLALGIQASVIKLLLSPLVKNFTVPLFF 206
           ++I+++ +   +++ W  +S   A+H+F +E  +   + +S ++ L       F VP++ 
Sbjct: 109 MKIYVYDLPASYNDDWVTASDRCASHLFAAEVAIHRALLSSDVRTLDPDEADYFFVPVYV 168

Query: 205 SCSFNT 188
           SC+F+T
Sbjct: 169 SCNFST 174


>At1g51320.1 68414.m05771 F-box family protein (FBX11) contains
           F-box domain PF:00646
          Length = 375

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +2

Query: 284 QLWLTKKDVVGRARGF---LPYVGMVTIYMNEYPKFKFAVLACLAIYVLVHRE*QKR*DL 454
           ++WLTK ++  R  G    + ++ ++T+ +  +PKF F       +   +  +  KR  +
Sbjct: 259 KIWLTKNNINDREVGLEEDVVWINLMTVLIPNFPKFSFYWYNRPDLTYFLDNDDAKRLVI 318

Query: 455 KCWEESRNIHTF 490
            C++E+   + +
Sbjct: 319 CCYDETDQAYIY 330


>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
           protein low similarity to post-transcriptional control
           of chloroplast gene expression CRP1 [Zea mays]
           GI:3289002; contains Pfam profile PF01535: PPR repeat
          Length = 855

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 541 LHLIIRIKYIHEPYNLRKSMYIPALFPTLQILALL 437
           L   +R+  + E YNL +SM    L P+LQ   LL
Sbjct: 611 LSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLL 645


>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
           profile PF00400: WD domain, G-beta repeat
          Length = 512

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 51  VLSGSMEPAFHRGDLLFLTNYPEEPVRVGEIVVFKVE 161
           + SGS++P  H  D+ +    P + ++  +  VFK E
Sbjct: 453 ITSGSVDPVIHVFDIRYNARKPTQSIKAHQKRVFKAE 489


>At1g75670.2 68414.m08791 expressed protein similar to DNA-dependent
           RNA polymerase 19 kDa polypeptide (EC 2.7.7.6) (A43)
           (Swiss-Prot:O43036) [Schizosaccharomyces pombe]
          Length = 196

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 108 NYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSLMTE 266
           ++    +++G ++  +V+  D  ++H    L  +N G VK+L K    +L T+
Sbjct: 135 SHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKSEEALPTD 187


>At1g75670.1 68414.m08790 expressed protein similar to DNA-dependent
           RNA polymerase 19 kDa polypeptide (EC 2.7.7.6) (A43)
           (Swiss-Prot:O43036) [Schizosaccharomyces pombe]
          Length = 196

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 108 NYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSLMTE 266
           ++    +++G ++  +V+  D  ++H    L  +N G VK+L K    +L T+
Sbjct: 135 SHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKSEEALPTD 187


>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
           protein low similarity to transcriptional repressor
           Not4-Np [Homo sapiens] GI:6856207; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif)
          Length = 944

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -3

Query: 342 TYGKNPLARPTTSFLVSHSWPWAYKPLSSSY----YCHLWLRTLLC 217
           TYGK   A         H +    KPL + +    YCH WLR + C
Sbjct: 122 TYGKEEEA--VRCIQAVHGFILDGKPLKACFGTTKYCHAWLRNVAC 165


>At2g28110.1 68415.m03415 exostosin family protein contains 1
           transmembrane domain; similar to
           pectin-glucuronyltransferase (GI:23821292) [Nicotiana
           plumbaginifolia]; similar to NpGUT1 homolog
           (GI:23821294) [Arabidopsis thaliana]; contains Pfam
           profile PF03016: Exostosin family
          Length = 448

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = -2

Query: 412 NCKTXQHSKLKLRIFIHIYGDHSNIWQKSSCTANHIFFSEPQLA---LGIQASVIKLLLS 242
           N KT   + LK+ ++  +    +  W  +    NH+F +E  L    L ++  V      
Sbjct: 85  NIKTDVFNNLKIYVY-DLPSKFNKDWLANDRCTNHLFAAEVALHKAFLSLEGDV--RTED 141

Query: 241 PLVKNFT-VPLFFSCSFNTL 185
           P   +F  VP++ SC+F+T+
Sbjct: 142 PYEADFFFVPVYVSCNFSTI 161


>At1g61330.1 68414.m06912 F-box family protein contains Pfam
           profile: PF00646 F-box domain; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 447

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 344 GMVTIYMNEYPKFKFAVLACL 406
           G++TIY +++ KFK  V++C+
Sbjct: 199 GILTIYAHDHKKFKSLVVSCM 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,555,317
Number of Sequences: 28952
Number of extensions: 267699
Number of successful extensions: 715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)