Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0525
         (621 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    43   0.005
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.012
UniRef50_P24357 Cluster: Kelch repeat protein F3; n=35; Orthopox...    35   1.8  
UniRef50_A0V038 Cluster: Membrane protein-like precursor; n=1; C...    34   3.1  
UniRef50_Q029U3 Cluster: Cna B domain protein precursor; n=1; So...    33   4.2  
UniRef50_Q1ZEI9 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 43.2 bits (97), Expect = 0.005
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -2

Query: 386 AEWWYLPVRTHKRSYHQ 336
           AEWWYLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.9 bits (94), Expect = 0.012
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = -2

Query: 569 LLRLVDELTAYLVLSGYWSPK 507
           LLR VDELTA+LVLSGYWSP+
Sbjct: 156 LLRWVDELTAHLVLSGYWSPR 176



 Score = 35.1 bits (77), Expect = 1.4
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = -1

Query: 513 PQDIYNVNAPPTSRYKF 463
           P+ +Y+VNAPPTSRYKF
Sbjct: 175 PRHLYDVNAPPTSRYKF 191


>UniRef50_P24357 Cluster: Kelch repeat protein F3; n=35;
           Orthopoxvirus|Rep: Kelch repeat protein F3 - Vaccinia
           virus (strain Western Reserve / WR) (VACV)
          Length = 480

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 543 GLPGVKWLLEPQDIYNVNAPPTSRYKF*GLKYNYNGCPIFQTETHYCFTAEIGRVV 376
           G+  VKW+L+   I++ +  P   YK+  ++Y  N   I     H C +  +G VV
Sbjct: 220 GINNVKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDI-FHMCTSTHVGEVV 274


>UniRef50_A0V038 Cluster: Membrane protein-like precursor; n=1;
           Clostridium cellulolyticum H10|Rep: Membrane
           protein-like precursor - Clostridium cellulolyticum H10
          Length = 250

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -2

Query: 158 FRPRRLNNTL*CIILSIKVLLELRVSEAPVRT 63
           F+P+R N+ L C+IL+I +L  + +  APV T
Sbjct: 62  FKPKRRNSILPCVILTIPILAGIIIPPAPVET 93


>UniRef50_Q029U3 Cluster: Cna B domain protein precursor; n=1;
           Solibacter usitatus Ellin6076|Rep: Cna B domain protein
           precursor - Solibacter usitatus (strain Ellin6076)
          Length = 1077

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 525 WLLEPQDIYNVNAPPTSRYKF*GLKYNYNGCPIFQTETHYCFTAEIGRVVVPTRADSQEV 346
           W    QD + V    T  Y   GL++ YNG      +  Y F    G++VVP +   ++ 
Sbjct: 597 WSFYAQDDFKVTQRLTLMY---GLRWEYNGPAYALNDNQYSFDLATGKIVVPNQNSIKQF 653

Query: 345 LP 340
            P
Sbjct: 654 SP 655


>UniRef50_Q1ZEI9 Cluster: Putative uncharacterized protein; n=1;
           Psychromonas sp. CNPT3|Rep: Putative uncharacterized
           protein - Psychromonas sp. CNPT3
          Length = 1292

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 21/62 (33%), Positives = 37/62 (59%)
 Frame = +1

Query: 31  ILKLWTEEKTCVRTGASETRSSNNTLMLNIMH*SVLLSRRGLKDKMSDAFVSNDATVFES 210
           +L+L   +KT +++ ASE    N T  L ++H S L+S+  LK  +S   V++ + +F S
Sbjct: 612 LLELINTDKTFIKSVASEQYHQNTTSELPLIHWSRLISK--LKPFLSRKKVNDQSVMFFS 669

Query: 211 RR 216
           +R
Sbjct: 670 QR 671


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,990,688
Number of Sequences: 1657284
Number of extensions: 11523583
Number of successful extensions: 22523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22522
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)