Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0525
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   3.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.8  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 31  ILKLWTEEKTCVRTGASE 84
           I  LW  EK C  T A+E
Sbjct: 277 IQSLWVLEKICTTTDAAE 294


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 160 DKMSDAFVSNDATVFESRRRVPIF 231
           + M+D F   DA++  S  RVPI+
Sbjct: 306 EMMADQFFVYDASITASLGRVPIW 329


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 160 DKMSDAFVSNDATVFESRRRVPIF 231
           + M+D F   DA++  S  RVPI+
Sbjct: 313 EMMADQFFVYDASITASLGRVPIW 336


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 464 SKVSSIITTAAPSFKP 417
           S  SS+ITT +PS  P
Sbjct: 259 SNTSSLITTPSPSASP 274


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,135
Number of Sequences: 336
Number of extensions: 3036
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)