Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0525
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    31   0.18 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   2.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.1  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
 Frame = -1

Query: 531 VKWLLE-PQDIYNV------NAPPTSRYKF*GLKYNYNGCPIFQTETHYCFTAEI--GRV 379
           + WLL+ P  +  V      N  P     F  ++ N  G  I +      F   I  G V
Sbjct: 141 ISWLLQLPDSVVGVTFLALGNGSPDILSTFAAVRVNSGGMAIGELLGSAFFIVAIVAGSV 200

Query: 378 --VVPTRADSQEVLPPV--IT*TIILRV*FLLHDVIPSPWKSIVNIVKYVFH 235
             + P +   +  L  V  +T TI+L + F+LHD   S W+S+V I+ Y+ +
Sbjct: 201 CLIKPFKIPRRHFLRDVAFLTGTILLVIMFVLHDGSLSIWQSLVMILYYLLY 252


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 269 SQS*TLLSTYFIRKIGTRLRDSNTVASLDTNASDILSFRPR 147
           SQS T +S      +G+R   S+++  L TN SD+ S+  R
Sbjct: 68  SQSRTTVSRV---SLGSRQHSSSSIRKLQTNVSDVRSYDER 105


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 391 NRQSGGTYPCGLTRGPTTSNYVNYNFAGLIFITRCYSFTVEVNREHC*VRISLEKL 224
           +R S G+Y   L     T+   +    GL+ +   +S+TV    E    RIS++ L
Sbjct: 645 SRSSPGSYHLFLNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTGTRISIDNL 700


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,954
Number of Sequences: 5004
Number of extensions: 48728
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)