Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0525
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0544 + 11367660-11368061,11368139-11368478,11369444-113695...    28   5.2  
02_03_0103 + 15244812-15245180,15245258-15245851                       27   9.1  

>02_02_0544 +
           11367660-11368061,11368139-11368478,11369444-11369571,
           11371249-11371404
          Length = 341

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 543 GLPGVKWLLEPQDIYNVNAPPTSRYKF*GLKYNYNGCPIFQT-ETH 409
           G+P  + +LE + +Y+ NAP    ++F          P FQT E+H
Sbjct: 128 GIPHQELVLEVEALYSSNAPKNRAFQFNHCWLKLRNSPKFQTLESH 173


>02_03_0103 + 15244812-15245180,15245258-15245851
          Length = 320

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 543 GLPGVKWLLEPQDIYNVNAPPTSRYKF*GLKYNYNGCPIFQT 418
           G+P  + +LE + +Y+ NAP    ++F          P FQT
Sbjct: 117 GIPHQELVLEAEALYSSNAPKNRAFQFNHCWLKLRNSPKFQT 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,049
Number of Sequences: 37544
Number of extensions: 324876
Number of successful extensions: 629
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)