Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0525
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      27   9.3  
SB_12098| Best HMM Match : p450 (HMM E-Value=1.7e-06)                  27   9.3  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 546  HGLPGVKWLLEPQDIYNVNAPPTSRYKF*GLKYNYNGCPI--FQTETHYCFTAEIGRV 379
            H   G  +  E  D Y    P T+RY    +++    C I  F T+T  C T +  +V
Sbjct: 983  HSTHGAAYRTEQCDTYQTGRPDTTRYGI--VRHGVTRCSIVRFDTDTTRCNTVQHSKV 1038


>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 273 WKSIVNIVKYVFH*KNWYP 217
           WK+I + V+Y+ + K WYP
Sbjct: 347 WKTINSAVEYISNEKGWYP 365


>SB_12098| Best HMM Match : p450 (HMM E-Value=1.7e-06)
          Length = 403

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +1

Query: 133 VLLSRRGLKDKMSDAFVSNDATVFESRRRVPIFLMKY--VLNNVHD*LPR 276
           VLL+ + L + ++D F++  ATV ++ R + ++L+ Y  +   +H+ L +
Sbjct: 315 VLLADKYLLNTLTDMFIAGYATVSDTLRWLIVYLVNYPHIQEEIHNALDK 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,218
Number of Sequences: 59808
Number of extensions: 383136
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)