Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0525
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.3  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 442 QRLPHLSNRNALLFHGRN 389
           ++ P L+NR +++FH  N
Sbjct: 107 EKRPELTNRKSVVFHHDN 124


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 98  LELRVSEAPVRTHVFSSVQSLRM*SVLY 15
           L  +VSE     H FSSV   R  +V Y
Sbjct: 79  LNAKVSEIAALNHKFSSVTLYRNKTVKY 106


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 442 QRLPHLSNRNALLFHGRN 389
           ++ P L+NR  ++FH  N
Sbjct: 229 EKRPELTNRKGVVFHHDN 246


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   CSTYNTDYILKLWTEEKTCVRTGASETRSSNNTL 108
           CS+Y      K+W  E++C+    S  R ++ +L
Sbjct: 57  CSSYLQVSGSKIWQMERSCMCCQESGEREASVSL 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,464
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)