Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0525
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    30   1.4  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    28   4.3  
At2g39110.1 68415.m04805 protein kinase, putative similar to pro...    28   4.3  

>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 424 SNRNALLFHGRNRQSGGTYPCGLTRGPTTSNYVNYNFAGLIFITR 290
           SN+ +L     NR S    P   + GP+  N V  N    IF+TR
Sbjct: 288 SNQTSLAAENENRTSSPPLPLATSSGPSGPNSVPGNSPSNIFLTR 332


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 442 QRLPHLSNRNALLFHGRNRQSGGTYPCGLTRGPT 341
           ++L HL++ + LL   R   S  T+  GLTR P+
Sbjct: 57  RKLRHLTDDDVLLGERRASTSSSTFDSGLTRSPS 90


>At2g39110.1 68415.m04805 protein kinase, putative similar to
           protein kinase [Lophopyrum elongatum]
           gi|13022177|gb|AAK11674
          Length = 435

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 555 GRAHGLPGVKWLLEPQDIYNVNAPPTSRYKF*GLKYNYNGCPIFQTETHYCFTA 394
           G   GLP +K  L P+D +  +     + +F  L    NGCP   T +H   T+
Sbjct: 382 GAPSGLPLMK-SLTPKDAFEASRRERVKRRFVELLIGENGCPNLPTWSHKLVTS 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,730,067
Number of Sequences: 28952
Number of extensions: 258884
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)