Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0523
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22KZ7 Cluster: Putative uncharacterized protein; n=3; ...    37   0.44 
UniRef50_Q6L0E1 Cluster: Multidrug resistance ABC transporter AT...    36   1.0  
UniRef50_Q22U20 Cluster: Putative uncharacterized protein; n=2; ...    34   2.4  
UniRef50_A6DRP2 Cluster: Putative uncharacterized protein; n=1; ...    34   3.1  
UniRef50_Q54VU5 Cluster: Armadillo repeat-containing protein; n=...    33   7.2  

>UniRef50_Q22KZ7 Cluster: Putative uncharacterized protein; n=3;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1748

 Score = 36.7 bits (81), Expect = 0.44
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 480  YNLSQQIASDSSQLSQFNVRY--KRLDESSIIKGGNLCIWTKKCY*YVNTD*FEYN 319
            Y+  Q+I S   +L ++ +RY  K++     +KG N C +TKK + YV    +E N
Sbjct: 1526 YSCKQKIISQYQELERYEIRYDKKKMKCQLCLKGDNGCYFTKKSHVYVFCGTYEQN 1581


>UniRef50_Q6L0E1 Cluster: Multidrug resistance ABC transporter
           ATP-binding and permease protein; n=2;
           Thermoplasmatales|Rep: Multidrug resistance ABC
           transporter ATP-binding and permease protein -
           Picrophilus torridus
          Length = 557

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 23/58 (39%), Positives = 31/58 (53%)
 Frame = -1

Query: 473 YHNKLHQIRHNYLNSMFDTNV*MSRLLSKVAICAFGQKNVINMSIQIDLNIIVSFKEY 300
           Y N L  IR N L S+F + V + + L  + +   G   VIN +IQI L  +VSF  Y
Sbjct: 227 YENYLANIRANRLGSIFSSLVDIIQALGIIIVIGVGATQVINHAIQIGL--LVSFIVY 282


>UniRef50_Q22U20 Cluster: Putative uncharacterized protein; n=2;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2660

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -1

Query: 503  FLRTYKYFIIYHNKLHQIRHNYLNSMFDTN---V*MSRLLSKVAICAFGQKNVINMSIQI 333
            +L+ Y+ F    +K+  +R+N+L++ F T    +   +L+ K     F Q+N+I   + +
Sbjct: 895  YLKEYQEFFQKFSKIQSLRNNHLSANFSTANELIDELKLVVKKLAQVFDQENIIQTPVLV 954

Query: 332  DLNIIVSFKEY 300
            +L+ I    EY
Sbjct: 955  NLDNIKLISEY 965


>UniRef50_A6DRP2 Cluster: Putative uncharacterized protein; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Putative
           uncharacterized protein - Lentisphaera araneosa HTCC2155
          Length = 283

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = -3

Query: 552 NVRTQIKSFPNKST*YVFKDIQILYNLSQQIASDSSQLSQFNVRYKRLDESSIIKGGNLC 373
           N    I  F N  T Y+    QI+YN      S +  L  F           ++  GN C
Sbjct: 44  NANKVIVEFENTGTFYISNGNQIVYNFIANKLSFNDYLHSFITGLLLFQRGHLLLHGNSC 103

Query: 372 IWT 364
           IWT
Sbjct: 104 IWT 106


>UniRef50_Q54VU5 Cluster: Armadillo repeat-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: Armadillo
           repeat-containing protein - Dictyostelium discoideum AX4
          Length = 1192

 Score = 32.7 bits (71), Expect = 7.2
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = -3

Query: 495 DIQILYNLSQQIASDSSQLSQFNVRYKRLDESSIIKGGNLCIWTK 361
           ++Q++  LS++IAS  S L  FN+ ++ L   +I+   +L I+ K
Sbjct: 614 ELQLILRLSEEIASAMSFLHSFNIVHRSLHPKNILLNSDLKIYIK 658


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,495,897
Number of Sequences: 1657284
Number of extensions: 9028583
Number of successful extensions: 22491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22488
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)