Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0523
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   3.8  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   3.8  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   5.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   5.0  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.8  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.8  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = -3

Query: 597 NSNYICIVTIIYVFYNVRTQIKSFPNKST*YVFKDIQILYNLSQQIASDSSQ 442
           N N + I+  +Y F +   +++  P++        ++IL  + Q I    SQ
Sbjct: 254 NKNAVLILPTLYAFIDKVLEVEYLPDQKVQLRSNSVEILQKIHQAIIQSPSQ 305


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -3

Query: 501 FKDIQILYNLSQQIASDSSQLSQFNVRYKRLDESSIIKGGNL 376
           F + Q++YN  +Q+ +D+  +S  +  +  ++  S++ GG +
Sbjct: 286 FINRQLIYNWPEQLFADAGIMSIEHADFDGIERLSLVTGGEI 327


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 147 LIIVXSDVLR*EYLDLTNQINAIKLEINPKDKIDMQVVKAF 25
           L  V +D++R E+L L N ++   LEI  +   D  + K+F
Sbjct: 188 LATVIADLVRGEFLQLKNTMDPSSLEIK-QSNFDYYIEKSF 227


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = -3

Query: 507 YVFKDIQILYNLSQQIASDSSQLSQFNVRYKRLDESSI---IKGGN 379
           ++ KDI+I   +++ +     ++S+FN   + LD SS+   +KGG+
Sbjct: 424 FLVKDIRISSLITEGVNPTLDEVSKFNPNNEDLDLSSLALSVKGGH 469


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 422 RTLN*DNCDESDAICCDKL*SICMSLKTYHVDLL 523
           RT+N    DE   +  DKL S C S   + VDLL
Sbjct: 584 RTMN-SKTDEGARLLTDKLISYCYSSALHIVDLL 616


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -1

Query: 533 NLFLTSQRDMFLRTYKYFIIYHNKLHQIRHNYLNSMFDTNV*MSRLLSKVAICAFGQKNV 354
           N FLT + ++ LR YK + +Y ++   ++  YL S F   + ++  L+ V +  F  + V
Sbjct: 331 NTFLTDRVELMLRAYKSYGLY-SQTETLQ--YLGSKFRVVLGVAEDLTDVEVGRFLLQKV 387

Query: 353 I 351
           +
Sbjct: 388 V 388


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
            Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 269  YLTCYYLRCRSEEFCDCQ 216
            Y+   YLR R  +F DCQ
Sbjct: 1018 YIDASYLRLRDTDFLDCQ 1035


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,011
Number of Sequences: 5004
Number of extensions: 42308
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)