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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0523
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22638| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    29   4.0  
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           28   7.0  

>SB_22638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 495 DIQILYNLSQQIASDSSQLSQFNVRYKRLDESSIIKGGNLCI-WTKKCY 352
           D++++Y+LS + A ++    Q NV+ +R   S I   G+  I WTK  Y
Sbjct: 253 DVKVVYDLSVEEAKNTKSSEQGNVKARRETLSMIENAGDGIIQWTKHVY 301


>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 320 IVSFKEYGSKPALNKS*YLTCYYLRCRSEEFCDCQWNTKSI 198
           +VS    G+ P    S Y  C+YLR   E  C C+ N+++I
Sbjct: 91  VVSSFFLGTSPEFEFSLYTACFYLRPGQE--CTCRINSQTI 129


>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 575

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 293 KPALNKS*YLTCYYLRCRSEEFCDC 219
           K A NK+ Y  C +  C S   CDC
Sbjct: 72  KTACNKTCYPACVHGTCNSNYLCDC 96


>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 386 VAICAFGQKNVINMSIQIDLNIIVSFKEYGSKPAL 282
           V I +FG K    +S  +  N+++SF + G KP L
Sbjct: 157 VGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKPPL 191


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 371 MHRLPPLIIDDSSRRLYRTLN*DNCDESDAI 463
           +H LPPL  DD  +RL+     DN ++  A+
Sbjct: 511 IHHLPPLCDDDKVKRLFDVKLEDNQEQRQAV 541


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,374
Number of Sequences: 59808
Number of extensions: 284581
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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