BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0523 (617 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_22638| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57 SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022) 29 4.0 SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0 SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 28 7.0 >SB_22638| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 431 Score = 31.5 bits (68), Expect = 0.57 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = -3 Query: 495 DIQILYNLSQQIASDSSQLSQFNVRYKRLDESSIIKGGNLCI-WTKKCY 352 D++++Y+LS + A ++ Q NV+ +R S I G+ I WTK Y Sbjct: 253 DVKVVYDLSVEEAKNTKSSEQGNVKARRETLSMIENAGDGIIQWTKHVY 301 >SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022) Length = 616 Score = 28.7 bits (61), Expect = 4.0 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -1 Query: 320 IVSFKEYGSKPALNKS*YLTCYYLRCRSEEFCDCQWNTKSI 198 +VS G+ P S Y C+YLR E C C+ N+++I Sbjct: 91 VVSSFFLGTSPEFEFSLYTACFYLRPGQE--CTCRINSQTI 129 >SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 575 Score = 27.9 bits (59), Expect = 7.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -1 Query: 293 KPALNKS*YLTCYYLRCRSEEFCDC 219 K A NK+ Y C + C S CDC Sbjct: 72 KTACNKTCYPACVHGTCNSNYLCDC 96 >SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 328 Score = 27.9 bits (59), Expect = 7.0 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 386 VAICAFGQKNVINMSIQIDLNIIVSFKEYGSKPAL 282 V I +FG K +S + N+++SF + G KP L Sbjct: 157 VGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKPPL 191 >SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) Length = 1064 Score = 27.9 bits (59), Expect = 7.0 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 371 MHRLPPLIIDDSSRRLYRTLN*DNCDESDAI 463 +H LPPL DD +RL+ DN ++ A+ Sbjct: 511 IHHLPPLCDDDKVKRLFDVKLEDNQEQRQAV 541 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,984,374 Number of Sequences: 59808 Number of extensions: 284581 Number of successful extensions: 515 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 489 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 515 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1524174750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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