Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0523
         (617 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095061-1|AAM11389.1| 1158|Drosophila melanogaster LP03070p pro...    30   2.9  
AF236106-1|AAF36990.1| 1701|Drosophila melanogaster receptor pro...    30   2.9  
AE013599-2319|AAF57973.1| 1701|Drosophila melanogaster CG8250-PA...    30   2.9  

>AY095061-1|AAM11389.1| 1158|Drosophila melanogaster LP03070p
           protein.
          Length = 1158

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 588 YICIVTIIYVFYNVRTQIKSFPNKST*YVFKDIQILYNLSQQIASDSSQLSQFNVRY 418
           +ICI  +I++ YN   + K    +    V +D+Q L  L   I  D S L+ FN  Y
Sbjct: 574 FICIAALIFMLYNRYQRKKQSKKRHKMLVEQDLQ-LTRLRNNI--DDSNLNNFNPNY 627


>AF236106-1|AAF36990.1| 1701|Drosophila melanogaster receptor protein
            tyrosine kinaseALK splice variant A protein.
          Length = 1701

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 588  YICIVTIIYVFYNVRTQIKSFPNKST*YVFKDIQILYNLSQQIASDSSQLSQFNVRY 418
            +ICI  +I++ YN   + K    +    V +D+Q L  L   I  D S L+ FN  Y
Sbjct: 1117 FICIAALIFMLYNRYQRKKQSKKRHKMLVEQDLQ-LTRLRNNI--DDSNLNNFNPNY 1170


>AE013599-2319|AAF57973.1| 1701|Drosophila melanogaster CG8250-PA
            protein.
          Length = 1701

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -3

Query: 588  YICIVTIIYVFYNVRTQIKSFPNKST*YVFKDIQILYNLSQQIASDSSQLSQFNVRY 418
            +ICI  +I++ YN   + K    +    V +D+Q L  L   I  D S L+ FN  Y
Sbjct: 1117 FICIAALIFMLYNRYQRKKQSKKRHKMLVEQDLQ-LTRLRNNI--DDSNLNNFNPNY 1170


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,790,298
Number of Sequences: 53049
Number of extensions: 405934
Number of successful extensions: 764
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)