Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0523
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    30   1.5  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical...    28   4.6  

>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 609 FWYSNSNYICIVTIIYVFYNVRTQIKSFPNKST 511
           FW S S++I ++ + Y+FY V  Q+ +   +ST
Sbjct: 316 FWMSQSHHIVVLYLSYIFYRVIYQLTTTIAQST 348


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 362 FVQMHRLPPLIIDDSSRRLYRTLN*DN 442
           F +MHR PP  +D++ R L+ T   DN
Sbjct: 705 FRRMHRHPPTWLDENDRELFGTQGLDN 731


>AF078157-12|AAG24073.1|  338|Caenorhabditis elegans Hypothetical
           protein F25E5.2 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -3

Query: 102 LTNQINAIKLEINPKDKIDMQVVKAFDDMYYL 7
           +TN+IN I LE+ P++++    ++  +D++ L
Sbjct: 291 ITNEINKIPLELTPEEQVVKDNIRNNEDLFRL 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,336,658
Number of Sequences: 27780
Number of extensions: 233011
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)