Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0523
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05440.1 68414.m00552 expressed protein ; expression supporte...    28   4.3  
At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero...    27   10.0 

>At1g05440.1 68414.m00552 expressed protein ; expression supported
           by MPSS
          Length = 393

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 260 CYYLRCRSEEFCDCQWNTKSIIRFSDL-PIIVQKS 159
           CY+  CR +  C C+    S+    DL P+ VQKS
Sbjct: 55  CYFPDCRKDANCSCEICLDSLNATLDLMPLSVQKS 89


>At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron
           superoxide dismutase 3 (FSD3) identical to iron
           superoxide dismutase 3 [Arabidopsis thaliana]
           gi|3273757|gb|AAC24834
          Length = 263

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 491 YKYFIIYHNKLHQIRHNYLNSMFDTNV*MSRLLSKVAICAFGQKNV 354
           + Y++ Y N   +  + +LN +   N  MSR+    A    G+ N+
Sbjct: 215 HSYYLDYKNDRAKYINTFLNHLVSWNAAMSRMARAEAFVNLGEPNI 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,031,891
Number of Sequences: 28952
Number of extensions: 194939
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)