Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0522
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    82   5e-17
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   1.7  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   3.8  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   5.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.8  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 82.2 bits (194), Expect = 5e-17
 Identities = 52/126 (41%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
 Frame = +3

Query: 255 FFICIYLHIGRGIYYESFNLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGATVIT 428
           FFI +YLHIGRG+YY S+                         Y LP  Q+SFWGATVIT
Sbjct: 89  FFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVIT 148

Query: 429 NLLSAIPYLGTILVN*I*GGFAVDNAT*PDFTHFIFYYRSLF*Y*Q*SIYYFYT--KQGS 602
           NLLSA+P++G  LV+ + GGF+V N T   F  F  +Y   F     S+ +       GS
Sbjct: 149 NLLSAVPFIGDDLVHLLWGGFSVSNPTLNRF--FSLHYLMPFVIAALSVMHLIALHTNGS 206

Query: 603 NNPLGL 620
           +NPLG+
Sbjct: 207 SNPLGV 212



 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 34/92 (36%), Positives = 49/92 (53%)
 Frame = +1

Query: 4   KTHPIFKIINNXXXXXXXXXXXXXXXXXXXXXALCLIIQIITGLFLTIYYTANIEIAFYR 183
           K++P   + NN                     A  L+IQI+ G+ L  +Y  N+++AF  
Sbjct: 5   KSNPFLALANNYMIDAPEPSNISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLAFLS 64

Query: 184 VNYICRNVNYG*IIRTLHANGASFFLFAFIYI 279
           V  I R+VNYG ++R  HANGASFF F F+Y+
Sbjct: 65  VERIVRDVNYGFLLRAFHANGASFF-FIFLYL 95


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 329 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 418
           NWN      +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 329 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 484
           N +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 124 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHANGASFFLFAFIYISDE 288
           +TG+F      ++ E  F+R+ ++C     + Y  I  TLH   A  FLF+   +S +
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLH---AFVFLFSHTLVSSQ 55


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 356 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 457
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 186 KLYLPKCKLWLNNSNITC*WSFIFFICIYLHIGRGIYYESFNLK 317
           + Y  KCKLW ++ N +   S+    C    IGRG+  + F+ K
Sbjct: 206 RYYCNKCKLWDDDPNKS---SYHCDDCGICRIGRGLGDDYFHCK 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,740
Number of Sequences: 5004
Number of extensions: 38204
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)