Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0522
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725...    28   6.9  
07_01_1182 + 11207282-11207330,11208015-11208094,11208181-112086...    28   6.9  

>10_08_0489 +
           18269824-18270270,18271659-18271948,18272341-18272512,
           18272608-18272730,18272832-18272960,18273061-18273255,
           18273384-18273470,18273563-18273835,18274047-18274154,
           18274769-18275116
          Length = 723

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 414 ATVITNLLSAIPYLGTILVN*I*GGFAVDNAT*-PDFTHFIFYYRSLF 554
           A VI+N +SA+P+L  IL+  I G          P FTH++F+   L+
Sbjct: 496 AFVISNTISAMPFL--ILITFISGTMCYFMVRLHPGFTHYLFFVLCLY 541


>07_01_1182 +
           11207282-11207330,11208015-11208094,11208181-11208645,
           11213485-11213568,11213925-11214113,11214191-11214277,
           11214343-11214969
          Length = 526

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +3

Query: 408 WGAT--VITNLLSAIPYLGTILV 470
           +GAT  VI+N LS+IPYLG I +
Sbjct: 329 YGATEFVISNTLSSIPYLGLISI 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,792,455
Number of Sequences: 37544
Number of extensions: 191057
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)