Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0521
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 30 0.21
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 30 0.28
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 1.5
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces... 27 1.5
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 2.0
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 2.0
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 2.6
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 26 3.4
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.5
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 4.5
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 4.5
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 6.0
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 6.0
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 25 7.9
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 7.9
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 30.3 bits (65), Expect = 0.21
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Frame = +1
Query: 13 LSLNKIQNTSEVNENIEDNPAKSSGGKNKNKPVHDLSGTQIEEIDA-------NSD---D 162
++ +KI+N S P+K N NKP +DL +IE+ +A +SD D
Sbjct: 108 ITYSKIENLSNTRMARLTAPSKGPSFSNLNKP-NDLLKAEIEDNEASHYSQNQSSDSDSD 166
Query: 163 DAPLEISFKFNKNDNQEPQCQEIDENTI 246
+AP E+S K + +D + + Q + N +
Sbjct: 167 EAPEEVSLK-SSSDEVKKRLQRLKGNEL 193
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 29.9 bits (64), Expect = 0.28
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 49 NENIEDNPAKSSGGKNKNKPVHDLSGTQIEEIDANSDDD 165
N+N N + SS + NK HD S + ID SDD+
Sbjct: 381 NDNGSFNVSSSSSSQTSNKKRHDHSYNETAAIDHKSDDN 419
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.5 bits (58), Expect = 1.5
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +1
Query: 43 EVNENIEDNPAKSSGGKNKNKPVHDLSGTQIEEI 144
++ E + PA+ + +N+++P+HD +E++
Sbjct: 99 DIYEKFGEKPAEDTKDENRSQPIHDPDHPTLEDV 132
>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 1.5
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -2
Query: 367 SVKCSDVGFSFTSFSISCTAS*SFLEGLRLR----FFDFLPSFLELYFHRFLDTV 215
S+ SD F +SFS S S+L ++R FF+FLP L H L TV
Sbjct: 11 SLILSDTAFPLSSFSYSYGLE-SYLSHQQVRDVNAFFNFLPLSLNSVLHTNLPTV 64
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +3
Query: 297 NDQEAVHEIEKDVNEKPTSEHFTLEENKKKKRKLAQENRNVPXNKDES 440
+D+E + E+++ EKP + E++ K K K ++ + + +S
Sbjct: 177 SDEEDAEQAEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDS 224
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 500 CFVICNIIISCFPLLVHFLFRFIF 429
CF++C+++ CF + F RF F
Sbjct: 515 CFLLCSLVEQCFGVFNDFSHRFDF 538
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 43 EVNENIEDNPAKSSGGKNKNKPVHDLSGTQIEEIDANSDDDAP--LEISFKFNKNDNQE 213
E + +I+D P+ +S KN ++ ++ + +SD D P L+ FN N E
Sbjct: 904 ESSNDIDDRPSSTSPSTLKNPSINSINRQTHDVEKESSDRDVPHLLDPDNNFNLKGNPE 962
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +1
Query: 46 VNENIEDNPAKSSGGKNKNKPVHDLSGTQIEEIDANSDDDAPLEISFKFNKNDNQEPQCQ 225
++E IED+ + +G K ++ +Q+ D N+ ++AP++ K +
Sbjct: 92 LSEYIEDHHSSCNGIKPPKPQFEPVANSQVLNKDVNNGNNAPIKNGVK----STAKGSAG 147
Query: 226 EIDENTIQGRK 258
++N++ G+K
Sbjct: 148 NHEKNSVNGQK 158
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 300 DQEAVHEIEKDVNEKPTSEHFTLEENKKKKRKLAQENRNVPXNK 431
D + + K+ N + EH +++NKKKK+ A+ K
Sbjct: 366 DNDPTNVSTKNRNNQTVGEHPYVDDNKKKKKGPAKPKEKATLGK 409
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 4.5
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = +1
Query: 10 RLSLNKIQNTSEVNENIEDNPAKSSGGKNKNKPVHDLSGTQI--------EEIDANSDDD 165
R SLN+++ S +NE I+ A S N TQ I +SD
Sbjct: 594 RTSLNQLEAASGINERIQTTSADSLLNSNGMSGTEGFENTQTSITTNDNQSSILTSSDQT 653
Query: 166 APLEISFKFNKNDNQEPQCQEIDEN 240
+P + ++ +++ Q + +DEN
Sbjct: 654 SP--FATDEDRQNSRNVQLETVDEN 676
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 4.5
Identities = 24/93 (25%), Positives = 42/93 (45%)
Frame = +1
Query: 1 DKKRLSLNKIQNTSEVNENIEDNPAKSSGGKNKNKPVHDLSGTQIEEIDANSDDDAPLEI 180
D++ L ++S NE+ P K+ G +N V D++ EE + S+ +A LEI
Sbjct: 134 DEQDYELRPRVSSSWNNESYNRLPIKTKDGLLQNV-VADVNNG--EEFLSESESEASLEI 190
Query: 181 SFKFNKNDNQEPQCQEIDENTIQGRKVKNRKSA 279
+ + Q+I +++KN K A
Sbjct: 191 DSDIKDEKQKSLEEQKIAPEIPVKQQIKNDKEA 223
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 105 FIFIFTATGFSWIIFDVLIYFA 40
F F FT GF +IF +++ F+
Sbjct: 356 FFFWFTIIGFGLLIFSIMLLFS 377
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 1 DKKRLSLNKIQNTSEVNENIEDNPAKSSGGKNKNK 105
D +R LN + +NE +ED+ + + G K K
Sbjct: 1616 DLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKK 1650
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 300 DQEAVHEIEKDVNEKPTSEHFTLEENKKKKRKLAQ---ENRNVPXNKDESEK 446
++++ HE +K +KP+++ + + KKK K + + ++ N +E K
Sbjct: 72 EKKSKHEHKKHKKDKPSADKDRISKKDKKKSKKGKSKTKEESIEINAEEGAK 123
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +1
Query: 25 KIQNTSEVNENIEDNPAKSSGGKNKNKPVHDLSGTQIEEIDANSDDDAPLEISF 186
+I++ S EN + P GK S + EE +DD ++SF
Sbjct: 9 EIKDISSKQENSSEVPKAEEAGKVVESQKDTTSEEKKEETTEKKEDDGKKDLSF 62
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 136 EEIDANSDDDAPLEISFKFNKNDNQEPQCQEIDENTIQGRKVKNRKS 276
+E+++NS DD +E+ + + N + + DE+ + R++ R S
Sbjct: 689 QELESNSSDDDVVEVHRELSHNSSSNDEDDGNDEDPL-SREMSRRLS 734
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/77 (20%), Positives = 34/77 (44%)
Frame = +1
Query: 43 EVNENIEDNPAKSSGGKNKNKPVHDLSGTQIEEIDANSDDDAPLEISFKFNKNDNQEPQC 222
E+ +ED A + + D T+ D + DD AP E S + ++ ++ +
Sbjct: 131 EITSLLEDEHALKEARGDSRERDRDRDRTRSSRFDDDDDDRAPYEES-RLSRAPSRASRY 189
Query: 223 QEIDENTIQGRKVKNRK 273
+ D + R+ ++R+
Sbjct: 190 DDDDRDHRSRRRSRSRR 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,073,512
Number of Sequences: 5004
Number of extensions: 41012
Number of successful extensions: 212
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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