Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0521
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.7  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 22  NKIQNTSEVNENIEDNPAKSSGGKNKN 102
           + IQNT+  N+N + N  K++  +  N
Sbjct: 421 DNIQNTNNQNDNNQKNNKKNANNQKNN 447


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 264 FYLPSLNCIFIDFLTLWL 211
           +Y+PS+  + I +++ WL
Sbjct: 238 YYIPSILIVVISWVSFWL 255


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 408 FLVLIYVFSFCSPLV 364
           F+  I+ FS+C P++
Sbjct: 211 FVATIFTFSYCIPMI 225


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 226 EIDENTIQGRKVKNRKSAN 282
           E++E ++QG K+K   S +
Sbjct: 444 ELEEESLQGSKIKESNSCS 462


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 265 FLPSFLELYFHRFLDTVAP 209
           +LP+ L +   RFLD   P
Sbjct: 809 YLPNSLRILLKRFLDITTP 827


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 273 FSIFYLPSLNCIFIDFLTLWL 211
           F+  ++P +  +   F+T WL
Sbjct: 304 FTTVFIPGIILVTSSFITFWL 324


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 273 FSIFYLPSLNCIFIDFLTLWL 211
           F+  ++P +  +   F+T WL
Sbjct: 273 FTTVFIPGIILVTSSFITFWL 293


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 273 FSIFYLPSLNCIFIDFLTLWL 211
           F+  ++P +  +   F+T WL
Sbjct: 324 FTTVFIPGIILVTSSFITFWL 344


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 273 FSIFYLPSLNCIFIDFLTLWL 211
           F+  ++P +  +   F+T WL
Sbjct: 273 FTTVFIPGIILVTSSFITFWL 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,295
Number of Sequences: 438
Number of extensions: 2601
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)