Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0520
(570 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 1e-34
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 143 1e-34
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 143 1e-34
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 143 1e-34
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 129 1e-30
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 74 7e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 51 8e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 45 4e-05
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 38 0.006
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 37 0.010
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.031
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 32 0.29
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 32 0.38
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 31 0.66
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8) 29 2.7
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 29 3.5
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026) 29 3.5
SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 27 8.2
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 27 8.2
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 83.8 bits (198), Expect = 9e-17
Identities = 39/69 (56%), Positives = 46/69 (66%)
Frame = +1
Query: 247 EEDYSTPXXXXXXXXXVXLAVLRFYKVDENGKIHRLXRECTGDQCXAGVFMAVMEDRHYC 426
+++Y+TP V LAVL++YKVDENGKI RL REC + C AGVFMA DR YC
Sbjct: 82 KKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDRQYC 141
Query: 427 GKCHSTMVF 453
GKC T VF
Sbjct: 142 GKCCLTYVF 150
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 441 IQKESTLHLV 450
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 517 IQKESTLHLV 526
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 143 bits (346), Expect = 1e-34
Identities = 69/70 (98%), Positives = 70/70 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 185 IQKESTLHLV 214
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 81.0 bits (191), Expect = 6e-16
Identities = 40/69 (57%), Positives = 53/69 (76%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQI VK KT TL+VE SDT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYN
Sbjct: 77 MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135
Query: 185 IQKESTLHL 211
I++ S LHL
Sbjct: 136 IKQGSILHL 144
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 129 bits (312), Expect = 1e-30
Identities = 62/63 (98%), Positives = 63/63 (100%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 185 IQK 193
IQK
Sbjct: 139 IQK 141
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 74.1 bits (174), Expect = 7e-14
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +2
Query: 110 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 214
IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 50.8 bits (116), Expect = 8e-07
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 11 IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 187
I V TLTG+ I + + P TI VK I+ K G P +QQRL+F G+ L D T I
Sbjct: 73 IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132
Query: 188 QKESTLHLV 214
+TLHL+
Sbjct: 133 FAGATLHLI 141
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLEDGRTLS 175
M I KTL +T +E+ +T+ +K KI+ K+ P +LI+AGK L D L
Sbjct: 67 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 126
Query: 176 DYNIQKES 199
+YNI ++S
Sbjct: 127 EYNIDEKS 134
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDY 181
M++ V G TL+V +EN +A ++ + G+P ++ L G QL D +TL+ Y
Sbjct: 1 MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60
Query: 182 NIQKESTLHLV 214
++++ + +V
Sbjct: 61 SVKENDVILMV 71
>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 35
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 106
M ++++TLTG L V P +TI +VKAKIQ E
Sbjct: 1 MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 8 QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
Q+F T TL +D + +K++I+ K GIP + QRL F K+L D TL+ N
Sbjct: 7 QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66
Query: 185 IQK 193
+++
Sbjct: 67 LKQ 69
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 35.5 bits (78), Expect = 0.031
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +2
Query: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 184
MQ+ VKTL +T T V +EGIP +QRLIF GK L+D + L +++
Sbjct: 1 MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 29 TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 193
+G L++ + TIE ++ ++ DK G PP QR I K + +L +++
Sbjct: 44 SGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRE 98
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 107 GIPPNQQRLIFAGKQLEDGRTLSDYN 184
GIP +QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 14 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 193
FV G+ ITL P + ++ + G P ++ K LED T++D + Q
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228
Query: 194 ESTLHL 211
+TL +
Sbjct: 229 GATLQI 234
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 68 TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 211
T+ ++K + +K G+ + RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +2
Query: 11 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 190
+ ++T G T+ +E+ ++E++KA+ + + GIP RL LED + +
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244
Query: 191 KEST 202
+++T
Sbjct: 245 QKAT 248
>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
Length = 180
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 58 AVRYHRECES*NSRQRGXPSQSTEVDLCWKAAGRWTYPLGLQY 186
+ Y +E E + RQR +S E D+C K R+T Y
Sbjct: 39 STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 100 QRGXPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 225
QRG S+ T + W+ +G + L IHPP V S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340
>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
Length = 309
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 17 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR---TLSDYNI 187
V + G+T + P +I +K KI + +QRL++ +L++ + LS++ +
Sbjct: 60 VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119
Query: 188 QKESTLHLV 214
+T+ L+
Sbjct: 120 PPYATISLI 128
>SB_10408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 549 LHTVSRFI*IHIHRVASVSYRLEGTYLFVVVFEDHR-AVTLPAVVTVLHHRHEH 391
L + S FI I H S + +F++++ +HR + ++ + HH H H
Sbjct: 136 LSSSSSFIKIRYHHRLLKSSK--SVIIFIIIYRNHRNPSSFIKIIKIRHHHHHH 187
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +2
Query: 26 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 157
L G +IT+ +E D +EN++ +K+ +PP ++L+F + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143
>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1
Query: 426 AVVTVLHHRHEH 391
A++TV+HHRH H
Sbjct: 525 AIITVIHHRHHH 536
>SB_6620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Frame = +1
Query: 337 GKIHRLXRECTGDQCXA---GVFMAVMEDRHYCGKC 435
G + R C GDQC G F D +YC KC
Sbjct: 10 GGLGRNGFTCDGDQCTPCHFGEFQTRENDTYYCKKC 45
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 27.5 bits (58), Expect = 8.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 331 ENGKIHRLXRECTGDQC 381
+ G+IH L +EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,765
Number of Sequences: 59808
Number of extensions: 341128
Number of successful extensions: 822
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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