Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0519
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    50   2e-07
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    29   0.70 
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    29   0.70 
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   6.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   6.5  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.7  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.7  

>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 21/46 (45%), Positives = 29/46 (63%)
 Frame = +3

Query: 18  QGKASHKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHF 155
           QG +SHK +    N ++R YY N  +LF  CA NE F+ +LY+L F
Sbjct: 134 QGASSHKTVTKKHNWMLRLYYGNNKVLFIFCAANEMFFVALYLLSF 179


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +2

Query: 347 PLFESQAGTNFSNEIRTQQMFTIDFHGEGTASYNNNETRKIIICVITGG 493
           PLF  +    F    RT  ++ I  +    A Y N + +K I C++  G
Sbjct: 303 PLFSEEEEEEFLEISRTPNLYDIISNSISPAIYGNVDIKKAIACLLFSG 351


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = +2

Query: 305 LKDKTSGAFVLSDAPLFESQAGTNFSNEIRTQQMFTIDFHGEGTASYNNNETRKI--IIC 478
           L+  TS    LSD+   E+    N  NE  ++      FH   T +  N   + I  I  
Sbjct: 171 LRRNTSKKSSLSDSSQKENTLTLNKENEFSSKDDSNFAFHNSSTKTTINRRKKAIGTISS 230

Query: 479 VITGGRTSC--AVGITTCLFSAVKQ*CVSVCRVGAAVVTILET 601
           +++   +SC  A+ +TT + S V      V  +GA ++ +L T
Sbjct: 231 LLSKITSSCYVAIFVTTQMTSKV------VSGIGAKLIPLLST 267


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 372 LIFLMKYVLNKCSRLTSTVKEQHRII 449
           L + + Y+L KC  LT TVKE H  +
Sbjct: 112 LTYCIPYLLEKCESLT-TVKENHTAV 136


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +3

Query: 45  DMSENPIMRAYYTNKWLLFYMCACNEAFYASLYV 146
           D + +P+ +A +T   ++ +   CN+  YAS+++
Sbjct: 66  DKTYSPLFKAGHTTWRIVLFPKGCNQTEYASVFL 99


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 123 AFYASLYVLHFYSGXTSMYKI 185
           AFY SL V +FY G    Y+I
Sbjct: 38  AFYVSLLVWNFYFGYRVFYRI 58


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 482 ITGGRTSCAVGITTCLFSAVKQ*CVSVCRVGAAVVTILETLE 607
           +T G  SC +GIT  ++S  KQ  + +C+  A   +++E L+
Sbjct: 96  VTFGVGSC-LGITKFIYSIFKQTGIWICKQVADESSLIEMLK 136


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 125 GFIASTHIEKEPFVGVIGTHDRILRHVNEF 36
           GF+ ST + K  F G + TH +   H++++
Sbjct: 7   GFLFSTILFKSAFAGWMDTHMKDEHHIDKY 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,859
Number of Sequences: 5004
Number of extensions: 49808
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)