Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0519
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0113 - 16786063-16786131,16786229-16786327,16786413-167864...    35   0.044
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    29   3.8  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    28   6.7  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    27   8.8  
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192...    27   8.8  

>06_03_0113 -
           16786063-16786131,16786229-16786327,16786413-16786469,
           16786795-16786909,16787331-16787413,16787481-16787531,
           16787914-16787951,16788153-16788213
          Length = 190

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 15  LQGKASHKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSGXTSMYKIYCN 194
           L GK SHK +  + N +++ YY ++  + + C  +E  Y  L++       + +    C 
Sbjct: 81  LSGKTSHKDVKDTGNWLLKLYYGHRPFMAFCCVASEVLYIILFLFADEKSTSLLNVCRCF 140

Query: 195 LSPNLPLTKF 224
           L  + PLT F
Sbjct: 141 LKGS-PLTFF 149


>05_04_0149 -
           18441561-18442082,18442723-18442861,18443295-18443352,
           18443630-18443664,18444528-18444886,18445304-18445450,
           18445849-18447954,18448300-18448494,18448629-18448709,
           18448758-18448874,18449281-18449370,18449466-18449552,
           18450293-18450315,18450675-18450804
          Length = 1362

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 290 ESRRGLKDKTSGAFVLSDAPLFESQAGTNFSNEIRTQQMFTIDFHGEGTASYNNNETRKI 469
           ES +GL+   +   V   A + E   G + S+   + ++FT     +G   + + +TR +
Sbjct: 532 ESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDTRLV 591

Query: 470 IICV 481
             CV
Sbjct: 592 PTCV 595


>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
            31227790-31228014,31228097-31228255,31228393-31228551,
            31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 116  ASTHIEKEPFVGVIGTHDRILRHVNE-FMRSLAL 18
            +STH EKE     +  H+R + H+ E   RSL L
Sbjct: 1315 SSTHAEKEEAAEKLAVHERTISHLTEVHTRSLEL 1348


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 339  AMHRCSNLRRVLIFLMKYVLNKCSRLTSTVKEQHRIIIMKP 461
            A  RC++  R L+F M      CSR T  +++Q  +++  P
Sbjct: 1984 AAARCADDVRALLFGMMLEQRACSRATVEMEQQRLLLVALP 2024


>01_07_0198 -
           41918276-41918408,41918486-41918841,41919091-41919237,
           41919666-41921789,41922150-41922344,41922488-41922568,
           41923325-41923414,41923507-41923593,41923914-41923961
          Length = 1086

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 290 ESRRGLKDKTSGAFVLSDAPLFESQAGTNFSNEIRTQQMFTIDFHGEGTASYNNNETRKI 469
           ES +GL+   +   V   A + E   G + S+   + ++FT     +G   + + ++R +
Sbjct: 458 ESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKIFTWGDGDKGRLGHGDKDSRFV 517

Query: 470 IICVITGGRTS-CAVGITTCLFSAV 541
             CV      + C V    CL  A+
Sbjct: 518 PTCVAALVEPNFCQVACGHCLTVAL 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,147
Number of Sequences: 37544
Number of extensions: 320077
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)