Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0519
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         29   3.9  
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 61  LSCVPITPTNGSFSICVLAMKPSTHRCTFCTS 156
           L CV   P+ G    C+ ++KP  H+  F TS
Sbjct: 369 LGCVFTLPSQGCHGECLSSVKPFAHKSGFATS 400


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +3

Query: 39  FIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLH 152
           F+  S  P    YY   W+ F    C     A LYVLH
Sbjct: 116 FVPSSVLPFTYQYYFIAWVAFIFVVCMTFLGAYLYVLH 153


>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -2

Query: 520 GDTYRARGPTTSNYANYNFSGFIIIIRCCSFTVEVNREHLLSTYFIRK--ISTRLRFEQR 347
           G T    GP TS Y N N +GF+++       V V RE +L      +   ++RL+   R
Sbjct: 255 GVTIGEIGPKTSRYYNVNDNGFLLLDH-----VRVPREQMLMGLAQSRGGTNSRLQVTTR 309

Query: 346 CIAQHKCTG 320
            +    C+G
Sbjct: 310 QVVSRACSG 318


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 522  VVIPTAQEVLPPVIT---QIIIFRVSLLLYDAVPSPW 421
            V+I    E+LP V+    Q+I+F V  +L  +V +PW
Sbjct: 916  VIIGCMDELLPDVLLDALQLILFSVGAVLLPSVLNPW 952


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,094,464
Number of Sequences: 59808
Number of extensions: 403726
Number of successful extensions: 924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)