Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0519
(608 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY094866-1|AAM11219.1| 224|Drosophila melanogaster RE35104p pro... 48 8e-06
AE014298-2191|AAF48491.2| 224|Drosophila melanogaster CG9245-PA... 48 8e-06
BT022457-1|AAY54873.1| 188|Drosophila melanogaster IP05910p pro... 29 5.0
BT021273-1|AAX33421.1| 193|Drosophila melanogaster RE45003p pro... 29 5.0
AE013599-2648|AAF57726.1| 190|Drosophila melanogaster CG14500-P... 29 5.0
AY118662-1|AAM50031.1| 642|Drosophila melanogaster SD10038p pro... 29 6.6
AF289995-1|AAG02460.1| 642|Drosophila melanogaster thyroid horm... 29 6.6
AF244916-1|AAF63336.1| 642|Drosophila melanogaster mediator tra... 29 6.6
AE014297-2456|AAF55506.1| 642|Drosophila melanogaster CG7957-PA... 29 6.6
>AY094866-1|AAM11219.1| 224|Drosophila melanogaster RE35104p
protein.
Length = 224
Score = 48.4 bits (110), Expect = 8e-06
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Frame = +3
Query: 9 AMLQGKASHKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSG----XTSM 176
+++ G++SHK +++N IMR YY K +L +MC NE FY LY+LHF G S+
Sbjct: 115 SVVVGRSSHK---VNDNFIMRLYY-QKDILTFMCCVNELFYVCLYLLHFTYGPLIFGASL 170
Query: 177 YKIYCNLS 200
+KI L+
Sbjct: 171 FKILAFLT 178
>AE014298-2191|AAF48491.2| 224|Drosophila melanogaster CG9245-PA,
isoform A protein.
Length = 224
Score = 48.4 bits (110), Expect = 8e-06
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Frame = +3
Query: 9 AMLQGKASHKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSG----XTSM 176
+++ G++SHK +++N IMR YY K +L +MC NE FY LY+LHF G S+
Sbjct: 115 SVVVGRSSHK---VNDNFIMRLYY-QKDILTFMCCVNELFYVCLYLLHFTYGPLIFGASL 170
Query: 177 YKIYCNLS 200
+KI L+
Sbjct: 171 FKILAFLT 178
>BT022457-1|AAY54873.1| 188|Drosophila melanogaster IP05910p
protein.
Length = 188
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 49 CLRILSCVPITPTNGSFSICVLAMKPST----HRCTFCTSIQDXQVCIKYTA 192
CL +++ V +TP S+ L +KP T H C I Q+C+ TA
Sbjct: 129 CLTLMANVTMTPEEAILSVHRLTVKPCTQWAPHICQAPLEIFKTQLCLNTTA 180
>BT021273-1|AAX33421.1| 193|Drosophila melanogaster RE45003p
protein.
Length = 193
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 49 CLRILSCVPITPTNGSFSICVLAMKPST----HRCTFCTSIQDXQVCIKYTA 192
CL +++ V +TP S+ L +KP T H C I Q+C+ TA
Sbjct: 134 CLTLMANVTMTPEEAILSVHRLTVKPCTQWAPHICQAPLEIFKTQLCLNTTA 185
>AE013599-2648|AAF57726.1| 190|Drosophila melanogaster CG14500-PA
protein.
Length = 190
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 49 CLRILSCVPITPTNGSFSICVLAMKPST----HRCTFCTSIQDXQVCIKYTA 192
CL +++ V +TP S+ L +KP T H C I Q+C+ TA
Sbjct: 131 CLTLMANVTMTPEEAILSVHRLTVKPCTQWAPHICQAPLEIFKTQLCLNTTA 182
>AY118662-1|AAM50031.1| 642|Drosophila melanogaster SD10038p
protein.
Length = 642
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 440 SYNNNETRKIIICVITGGRTSCAVGITTCL 529
SY E R +I+C I + SC + + C+
Sbjct: 506 SYEPQELRDLILCQINSHQISCLISLARCM 535
>AF289995-1|AAG02460.1| 642|Drosophila melanogaster thyroid hormone
receptor-associatedprotein TRAP80 protein.
Length = 642
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 440 SYNNNETRKIIICVITGGRTSCAVGITTCL 529
SY E R +I+C I + SC + + C+
Sbjct: 506 SYEPQELRDLILCQINSHQISCLISLARCM 535
>AF244916-1|AAF63336.1| 642|Drosophila melanogaster mediator
transcriptional cofactorTRAP80 protein.
Length = 642
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 440 SYNNNETRKIIICVITGGRTSCAVGITTCL 529
SY E R +I+C I + SC + + C+
Sbjct: 506 SYEPQELRDLILCQINSHQISCLISLARCM 535
>AE014297-2456|AAF55506.1| 642|Drosophila melanogaster CG7957-PA
protein.
Length = 642
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 440 SYNNNETRKIIICVITGGRTSCAVGITTCL 529
SY E R +I+C I + SC + + C+
Sbjct: 506 SYEPQELRDLILCQINSHQISCLISLARCM 535
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,659,649
Number of Sequences: 53049
Number of extensions: 579050
Number of successful extensions: 1131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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