Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0519
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           24   1.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           24   1.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.4  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 101 EKEPFVGVIGTHDR 60
           EK P +G++GTH R
Sbjct: 88  EKNPKLGILGTHGR 101


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 101 EKEPFVGVIGTHDR 60
           EK P +G++GTH R
Sbjct: 89  EKNPKLGILGTHGR 102


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 526 PIFCREAVMRFGLQGWGSC 582
           PI CRE   RF     GSC
Sbjct: 171 PIECRELTARFTTDVIGSC 189


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 137 RCVEGFIASTHIEKEPFVGVIGTHDRILRHVNE 39
           RC +G +     EKE    ++G +D  +R   E
Sbjct: 20  RCTQGKVNYREKEKEVLDNILGGYDARIRPSGE 52


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 137 RCVEGFIASTHIEKEPFVGVIGTHDRILRHVNE 39
           RC +G +     EKE    ++G +D  +R   E
Sbjct: 20  RCTQGKVNYREKEKEVLDNILGGYDARIRPSGE 52


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 517 DTYRARGPTTSNYANYNFSGFI 452
           DT  A  P T+NY    ++G +
Sbjct: 349 DTVAAEWPATTNYLYLTYNGTV 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,362
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)