Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0519
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat...    36   0.028
At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol 3-phosphat...    36   0.028
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea...    28   4.2  
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat...    28   5.6  
At3g20800.1 68416.m02630 rcd1-like cell differentiation protein,...    28   5.6  
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    27   7.4  

>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase, putative /
           phosphatidylinositol synthase, putative similar to
           phosphatidylinositol synthase (PIS1) - Arabidopsis
           thaliana, PID:e1313354 [gi:3367632]
          Length = 225

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 15  LQGKASHKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVL 149
           L GK SHK +  S + + R YY N+  + Y C   E  Y  L ++
Sbjct: 118 LSGKTSHKDVKDSTSWLFRLYYGNRMFMGYCCVSCEVLYIILLLI 162


>At1g68000.1 68414.m07768 CDP-diacylglycerol--inositol
           3-phosphatidyltransferase / phosphatidylinositol
           synthase (PIS1) identical to phosphatidylinositol
           synthase (PIS1) GB:AJ000539 [gi:3367632]
          Length = 227

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 15  LQGKASHKFIDMSENPIMRAYYTNKWLLFYMCACNEAFYASLYVLHFYSGXTSMYKIYCN 194
           L GK+SHK +  S + + R YY N+  + Y C   E  Y  L ++        +  +   
Sbjct: 121 LAGKSSHKDVKDSTSWLFRLYYGNRIFMCYCCVSCEVLYIILLLIAKNQSENLLNVVVAT 180

Query: 195 LSPNLPLT 218
           L+   PL+
Sbjct: 181 LTQISPLS 188


>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
           family protein similar to signal transducer and
           activator of transcription interacting protein 1
           (GI:15929722) {Mus musculus}; similar to hypothetical
           protein GB:AAD43147 GI:5430747 from (Arabidopsis
           thaliana); contains Pfam PF00400: WD domain, G-beta
           repeat (11 copies, 2 weak)
          Length = 840

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 9   AMLQGKASHKFIDMSENPIMRAY 77
           AM+QGK +H+F+  +E  ++R +
Sbjct: 475 AMVQGKGNHRFVSGAEEKVVRVF 497


>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1062

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 290 ESRRGLKDKTSGAFVLSDAPLFESQAGTNFSNEIRTQQMFTIDFHGEGTASYNNNETRKI 469
           +S +GL+   +   V   A + E   G++ S+   + ++FT     +G   + N E + +
Sbjct: 447 DSLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLV 506

Query: 470 IICV 481
             CV
Sbjct: 507 PTCV 510


>At3g20800.1 68416.m02630 rcd1-like cell differentiation protein,
           putative similar to protein involved in sexual
           development [Schizosaccharomyces pombe] GI:1620896;
           contains Pfam profile PF04078: Cell differentiation
           family, Rcd1-like
          Length = 316

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 25  RLLINSLTCLRILSCVPITPTNGSFSICVLAMKPSTHR 138
           RL  N   C  + SC+P +  +GSFS C L   P+  R
Sbjct: 254 RLSDNPRACAALASCLPDSLRDGSFSNC-LREDPTARR 290


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 236 RGCSSYD*LLGDVTGSTWESRRGLKDKTSGAFVLS 340
           R C   D    D++G  W+SR  +KD  +G + LS
Sbjct: 140 RVCIGGDYFETDLSGENWKSRPPVKDLGNGTYSLS 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,917,557
Number of Sequences: 28952
Number of extensions: 259719
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)