Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0518
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    30   0.018
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.1  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   8.3  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 29.9 bits (64), Expect = 0.018
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 381 SPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVV 479
           SP+A+P+T+  KK  D   R+C+D R +N  ++
Sbjct: 339 SPYASPMTVGKKK--DGTVRICLDARMINSKMI 369



 Score = 26.2 bits (55), Expect = 0.22
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 547 SLDINSAFWSXPLEIPDRHKTAFV 618
           ++D+ S++W  PL    R  TAF+
Sbjct: 393 TIDLRSSYWQIPLSPESRQYTAFL 416


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 604 YVYLEFPMXSTKMLSLCLMRIILTVYCF 521
           Y Y  F + +  +L  C++ I+L +Y F
Sbjct: 214 YFYSAFIIFTIHLLFYCVLIILLCIYYF 241


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 590 ISNGIDQNAEFMSNENNTYSLL 525
           + +    N   +SN+NNTY +L
Sbjct: 11  LDSSTQPNYLILSNKNNTYLVL 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,596
Number of Sequences: 336
Number of extensions: 2410
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)