Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0518
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 35 0.011
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 35 0.011
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 35 0.011
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 35 0.011
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 35 0.011
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 35 0.011
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 35 0.011
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 35 0.011
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 35 0.011
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 35 0.011
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 35 0.011
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.54
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 2.9
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 26 3.8
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe... 25 8.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.8
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 390 AAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
A PV KKE R+ +D++ LNK V P P PLIE
Sbjct: 449 ACPVMFVPKKEGT--LRMVVDYKPLNKYVKPNIYPLPLIE 486
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.1 bits (62), Expect = 0.54
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 59 KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKIEKLVDK 196
K+G T+N K EI ++E + DE + + + QQ I LV++
Sbjct: 102 KEGITLNKKKSLEIKYDEERSFDEKENDESEFEDGQQGFIPLLVNR 147
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 68 TTINTNKLCEINFNEHVNIDEF--QMSVNHLDLYQQSKIEKLVDKYKSV 208
TT+ + L EINF EH +D + +++++DL +Q+ V K +
Sbjct: 991 TTVGFHYLSEINFIEH-ELDNWYHHRNIDYVDLLEQNFFLSFVSNLKII 1038
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 318 QNRN*KSNIEATTEKFDRGSYSPFAAPVTLAYKKE 422
+N+ + N E T+E+F+ G Y P P+ KE
Sbjct: 110 KNQKNQENNEPTSEEFEEGEYPPPLPPLRSEKLKE 144
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 473 SSSTITTFPTYRDLMTKTVNCKY 541
S +T+TT P + + T + CKY
Sbjct: 234 SPATVTTLPPFMSMSTIPIPCKY 256
>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 161 YQQSKIEKLVDKYKSVFAMDKYDV 232
Y EK+V++YK++ D YD+
Sbjct: 374 YTSEVFEKIVEEYKNIVQNDFYDL 397
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 345 RYLTFNFCSVFNCAC 301
RY+ FNF +V+N +C
Sbjct: 217 RYVDFNFTNVYNTSC 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,152
Number of Sequences: 5004
Number of extensions: 40273
Number of successful extensions: 124
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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