Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0518
(618 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 46 3e-05
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 44 1e-04
AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated po... 42 5e-04
AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed... 40 0.003
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 40 0.004
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 40 0.004
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 39 0.005
AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein ... 39 0.006
AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein ... 38 0.014
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 37 0.019
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 37 0.019
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros... 37 0.025
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 37 0.025
AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed... 37 0.025
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 37 0.025
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 36 0.033
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 36 0.058
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 36 0.058
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 34 0.13
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 34 0.13
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 34 0.13
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 34 0.13
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 34 0.13
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 34 0.13
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 34 0.13
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 34 0.13
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 34 0.13
AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein. 33 0.31
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 33 0.41
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 33 0.41
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3
Query: 363 FDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
F R S S +A+P+ L KK D R+C+DFR LNK+ + + P PLI+
Sbjct: 744 FIRPSDSEYASPIVLVKKKTGD--LRMCVDFRKLNKMTMKDNYPLPLID 790
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/46 (47%), Positives = 27/46 (58%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLI 506
R S SPFA+P+ L KK RLC+DFR+LN + P PLI
Sbjct: 487 RPSCSPFASPMLLVKKKNGTD--RLCVDFRELNSNTISDKYPLPLI 530
>AF541947-2|AAN34648.1| 407|Drosophila melanogaster truncated pol
protein protein.
Length = 407
Score = 42.3 bits (95), Expect = 5e-04
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKED---DKKTRLCIDFRDLNKIVVPQSXPFPLI 506
+ S+SP++APV + KK D +KK RL IDFR LN+ V P P I
Sbjct: 214 KNSHSPWSAPVWVVPKKSDNIGEKKWRLVIDFRKLNEKTVSDRYPIPNI 262
>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1065
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKED---DKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
R S SP+ +PV + KK D K R+ ID+R+LN+I V P P+++
Sbjct: 225 RKSNSPYCSPVWVVPKKPDASGKSKFRIVIDYRNLNEITVDDKYPIPVMD 274
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 39.5 bits (88), Expect = 0.004
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 333 KSNIEAT-TEKFDRGSYSPFAAPVTLAYKK---EDDKKTRLCIDFRDLNKIVVPQSXPFP 500
K IEA + + SYSP++APV + KK ++K RL ID+R LN+ + P P
Sbjct: 219 KKQIEAMLNQDIIKSSYSPWSAPVWVVPKKITPTGEQKWRLVIDYRKLNEKTISDRYPIP 278
Query: 501 LI 506
I
Sbjct: 279 NI 280
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKED---DKKTRLCIDFRDLNKIVVPQSXPFP 500
R S SP+ +P+ + KK D KK R+ ID+R LN+I + P P
Sbjct: 184 RESNSPYCSPIVVVPKKPDISGQKKYRIAIDYRYLNEITIADKYPIP 230
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 39.1 bits (87), Expect = 0.005
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +3
Query: 333 KSNIEATTEK-FDRGSYSPFAAPVTLAYKKED---DKKTRLCIDFRDLNKIVVPQSXPFP 500
K IE+ ++ R S+SP++APV + KK D ++K RL ID+R LN + P P
Sbjct: 333 KKQIESMLDQQIIRSSHSPWSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDKTISDRYPIP 392
Query: 501 LI 506
I
Sbjct: 393 NI 394
>AJ009736-2|CAA08807.1| 1150|Drosophila melanogaster Pol protein
protein.
Length = 1150
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKED---DKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
R S SP+ +P+ + KK D +K RL +D+R+LN+I V P P ++
Sbjct: 310 RKSKSPYCSPIWVVPKKADASGKQKFRLVVDYRNLNEITVNDKFPIPRMD 359
>AF492764-2|AAM11674.1| 849|Drosophila melanogaster pol protein
protein.
Length = 849
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKED---DKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
R S SP+ +P+ + KK D +K R+ ID+R LN+I + P P I+
Sbjct: 199 RESSSPYCSPIWVVPKKLDASGQQKLRIVIDYRKLNEITINDRYPMPNID 248
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 37.1 bits (82), Expect = 0.019
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKED---DKKTRLCIDFRDLNKIVVPQSXPFP 500
R S SP+ +P+ + KK+D +K R+ ID+R LN+I V P P
Sbjct: 237 RTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIP 283
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKK---EDDKKTRLCIDFRDLNKIVVPQSXPFP 500
R S SP+ +P+ + KK +K+ R+ +DF+ LN + +P + P P
Sbjct: 153 RPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIP 199
>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
Drosophila melanogastertransposable element 297. ).
Length = 1059
Score = 36.7 bits (81), Expect = 0.025
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK---KTRLCIDFRDLNKIVVPQSXPFP 500
R S SP+ +P + KK D K R+ ID+R LN+I +P P P
Sbjct: 236 RESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIP 282
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 36.7 bits (81), Expect = 0.025
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDD---KKTRLCIDFRDLNKIVVPQSXPFP 500
R S SP+ +PV + KK D KK R+ ID+R LN + V P P
Sbjct: 225 RPSRSPYNSPVWIVPKKLDSSGKKKYRVVIDYRKLNMVTVADRYPIP 271
>AF364549-2|AAK52055.1| 1013|Drosophila melanogaster RNA-directed
DNA polymerase protein.
Length = 1013
Score = 36.7 bits (81), Expect = 0.025
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +3
Query: 375 SYSPFAAPVTLAYKKEDD----KKTRLCIDFRDLNKIVVPQSXPFPLI 506
S SP+ P+ + KK D KK RL +DFR LN+ VP P P I
Sbjct: 190 SKSPYNNPIWVVDKKGTDDAGNKKMRLVLDFRKLNERTVPDRYPMPNI 237
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 36.7 bits (81), Expect = 0.025
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDD---KKTRLCIDFRDLNKIVVPQSXPFP 500
R S SP+ +PV + KK D KK R+ ID+R LN + V P P
Sbjct: 68 RPSRSPYNSPVWIVPKKLDSSGKKKYRVVIDYRKLNMVTVADRYPIP 114
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 36.3 bits (80), Expect = 0.033
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDD---KKTRLCIDFRDLNKIVVPQSXPFPLIE 509
R S SP+ +P+ + KK D +K RL +D+R LNK + P P I+
Sbjct: 162 RHSKSPYNSPLWVVQKKMDQSNKQKWRLVVDYRKLNKETIEDRFPIPNID 211
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 35.5 bits (78), Expect = 0.058
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 357 EKFDRGSYSPFAAPVTLAYKKE----DDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
+K S S + +P+ L KK D KK RL ID+R +NK ++ P P I+
Sbjct: 340 DKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRID 394
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 35.5 bits (78), Expect = 0.058
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 357 EKFDRGSYSPFAAPVTLAYKKE----DDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
+K S S + +P+ L KK D KK RL ID+R +NK ++ P P I+
Sbjct: 103 DKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRID 157
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 333 KSNIEATTEK-FDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
K +E E+ R S S A+ + + KK D R+C+D+R LN +V+ P P++E
Sbjct: 505 KKQVEEWVEQSIVRKSTSNVASRIVVVRKK--DGTLRVCVDYRKLNTMVLMDCFPVPIME 562
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDKK----TRLCIDFRDLNKIVVPQSXPFPLI 506
R S SP+ +P + KK D RL IDFR LN+ +P P P I
Sbjct: 191 RPSRSPYNSPTWVVDKKGTDASGNPNKRLVIDFRKLNEKTIPDRYPMPSI 240
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK----KTRLCIDFRDLNKIVVPQSXPFPLI 506
R S SP+ +P + KK D RL IDFR LN+ +P P P I
Sbjct: 186 RPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSI 235
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK----KTRLCIDFRDLNKIVVPQSXPFPLI 506
R S SP+ +P + KK D RL IDFR LN+ +P P P I
Sbjct: 221 RPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSI 270
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK----KTRLCIDFRDLNKIVVPQSXPFPLI 506
R S SP+ +P + KK D RL IDFR LN+ +P P P I
Sbjct: 221 RPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSI 270
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK----KTRLCIDFRDLNKIVVPQSXPFPLI 506
R S SP+ +P + KK D RL IDFR LN+ +P P P I
Sbjct: 186 RPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNERTIPDRYPMPSI 235
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK----KTRLCIDFRDLNKIVVPQSXPFPLI 506
R S SP+ +P + KK D RL IDFR LN+ +P P P I
Sbjct: 186 RPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNERTIPDRYPMPSI 235
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p
protein.
Length = 1026
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 333 KSNIEATTEK-FDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
K +E E+ R S S A+ + + KK D R+C+D+R LN +V+ P P++E
Sbjct: 199 KKQVEEWVEQSIVRKSTSNVASRIVVVKKK--DGTLRVCVDYRKLNTMVLMDCFPVPIME 256
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK----KTRLCIDFRDLNKIVVPQSXPFPLI 506
R S SP+ +P + KK D RL IDFR LN+ +P P P I
Sbjct: 639 RPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSI 688
>AY180916-3|AAN87268.1| 994|Drosophila melanogaster ORF3 protein.
Length = 994
Score = 33.1 bits (72), Expect = 0.31
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 375 SYSPFAAPVTLAYKK----EDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
S S + +P+ L KK +K+ RL +D+R +NK ++ P P IE
Sbjct: 101 SMSEYNSPLLLVPKKPLPNSTEKRWRLAVDYRQINKKLLSDKFPLPRIE 149
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 369 RGSYSPFAAPVTLAYKKEDDK----KTRLCIDFRDLNKIVVPQSXPFP 500
R S SP+ PV + KK D+ K RL IDFR LN + P P
Sbjct: 217 RPSSSPYNNPVWVVDKKGTDEEGNTKKRLVIDFRKLNLKTIDDKYPIP 264
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 32.7 bits (71), Expect = 0.41
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 357 EKFDRGSYSPFAAPVTLAYKKE----DDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
+K + S + +P+ L KK +KK RL ID+R +NK ++ P P I+
Sbjct: 234 DKIVEPAVSEYNSPLLLVPKKSLPDSKEKKWRLVIDYRQINKKLLADKFPLPRID 288
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,023,993
Number of Sequences: 53049
Number of extensions: 392490
Number of successful extensions: 785
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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