BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0518 (618 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 46 3e-05 L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 46 3e-05 L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 46 3e-05 Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 3.5 Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 3.5 Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 3.5 Z73909-2|CAD36493.1| 921|Caenorhabditis elegans Hypothetical pr... 28 6.1 Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr... 28 6.1 Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr... 28 6.1 Z73906-15|CAD36486.1| 921|Caenorhabditis elegans Hypothetical p... 28 6.1 Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p... 28 6.1 AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein. 28 6.1 >U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env protein precursor protein. Length = 2272 Score = 45.6 bits (103), Expect = 3e-05 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = +3 Query: 357 EKFDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509 +K R S SP+++PV L KK D R+CID+R +NK+V + P P IE Sbjct: 1054 QKVIRESKSPWSSPVVLVKKK--DGSIRMCIDYRKVNKVVKNNAHPLPNIE 1102 >L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1 protein, isoforma protein. Length = 2175 Score = 45.6 bits (103), Expect = 3e-05 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = +3 Query: 357 EKFDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509 +K R S SP+++PV L KK D R+CID+R +NK+V + P P IE Sbjct: 957 QKVIRESKSPWSSPVVLVKKK--DGSIRMCIDYRKVNKVVKNNAHPLPNIE 1005 >L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1 protein, isoformb protein. Length = 2186 Score = 45.6 bits (103), Expect = 3e-05 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = +3 Query: 357 EKFDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509 +K R S SP+++PV L KK D R+CID+R +NK+V + P P IE Sbjct: 968 QKVIRESKSPWSSPVVLVKKK--DGSIRMCIDYRKVNKVVKNNAHPLPNIE 1016 >Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical protein T04H1.4b protein. Length = 1312 Score = 28.7 bits (61), Expect = 3.5 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = +2 Query: 41 LYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDL---YQQSKIEKLVDK 196 LY +++ + LC+ +F I+EF + ++ L +Q ++EKLV K Sbjct: 666 LYDSYIEESKSSGCCPLCDRDFKTKKEINEFSKKLENMTLSFPTEQEELEKLVSK 720 >Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein T04H1.4a protein. Length = 1298 Score = 28.7 bits (61), Expect = 3.5 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = +2 Query: 41 LYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDL---YQQSKIEKLVDK 196 LY +++ + LC+ +F I+EF + ++ L +Q ++EKLV K Sbjct: 652 LYDSYIEESKSSGCCPLCDRDFKTKKEINEFSKKLENMTLSFPTEQEELEKLVSK 706 >Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue ceRAD50 protein. Length = 1298 Score = 28.7 bits (61), Expect = 3.5 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = +2 Query: 41 LYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDL---YQQSKIEKLVDK 196 LY +++ + LC+ +F I+EF + ++ L +Q ++EKLV K Sbjct: 652 LYDSYIEESKSSGCCPLCDRDFKTKKEINEFSKKLENMTLSFPTEQEELEKLVSK 706 >Z73909-2|CAD36493.1| 921|Caenorhabditis elegans Hypothetical protein D2030.10b protein. Length = 921 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +2 Query: 59 KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178 KKG + + + L ++ F++ N+DE ++S+ LD+ + I Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156 >Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical protein D2030.10a protein. Length = 1009 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +2 Query: 59 KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178 KKG + + + L ++ F++ N+DE ++S+ LD+ + I Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156 >Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical protein D2030.10a protein. Length = 1009 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +2 Query: 59 KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178 KKG + + + L ++ F++ N+DE ++S+ LD+ + I Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156 >Z73906-15|CAD36486.1| 921|Caenorhabditis elegans Hypothetical protein D2030.10b protein. Length = 921 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +2 Query: 59 KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178 KKG + + + L ++ F++ N+DE ++S+ LD+ + I Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156 >Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical protein D2030.10a protein. Length = 1009 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +2 Query: 59 KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178 KKG + + + L ++ F++ N+DE ++S+ LD+ + I Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156 >AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein. Length = 1009 Score = 27.9 bits (59), Expect = 6.1 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = +2 Query: 59 KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178 KKG + + + L ++ F++ N+DE ++S+ LD+ + I Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,815,404 Number of Sequences: 27780 Number of extensions: 222581 Number of successful extensions: 613 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 604 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 610 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1342816466 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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