Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0518
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    46   3e-05
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    46   3e-05
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    46   3e-05
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    29   3.5  
Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p...    28   6.1  
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.      28   6.1  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 32/51 (62%)
 Frame = +3

Query: 357  EKFDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
            +K  R S SP+++PV L  KK  D   R+CID+R +NK+V   + P P IE
Sbjct: 1054 QKVIRESKSPWSSPVVLVKKK--DGSIRMCIDYRKVNKVVKNNAHPLPNIE 1102


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 32/51 (62%)
 Frame = +3

Query: 357  EKFDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
            +K  R S SP+++PV L  KK  D   R+CID+R +NK+V   + P P IE
Sbjct: 957  QKVIRESKSPWSSPVVLVKKK--DGSIRMCIDYRKVNKVVKNNAHPLPNIE 1005


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 32/51 (62%)
 Frame = +3

Query: 357  EKFDRGSYSPFAAPVTLAYKKEDDKKTRLCIDFRDLNKIVVPQSXPFPLIE 509
            +K  R S SP+++PV L  KK  D   R+CID+R +NK+V   + P P IE
Sbjct: 968  QKVIRESKSPWSSPVVLVKKK--DGSIRMCIDYRKVNKVVKNNAHPLPNIE 1016


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
           protein T04H1.4b protein.
          Length = 1312

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 41  LYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDL---YQQSKIEKLVDK 196
           LY   +++  +     LC+ +F     I+EF   + ++ L    +Q ++EKLV K
Sbjct: 666 LYDSYIEESKSSGCCPLCDRDFKTKKEINEFSKKLENMTLSFPTEQEELEKLVSK 720


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
           protein T04H1.4a protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 41  LYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDL---YQQSKIEKLVDK 196
           LY   +++  +     LC+ +F     I+EF   + ++ L    +Q ++EKLV K
Sbjct: 652 LYDSYIEESKSSGCCPLCDRDFKTKKEINEFSKKLENMTLSFPTEQEELEKLVSK 706


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
           ceRAD50 protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 41  LYSEIVKKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDL---YQQSKIEKLVDK 196
           LY   +++  +     LC+ +F     I+EF   + ++ L    +Q ++EKLV K
Sbjct: 652 LYDSYIEESKSSGCCPLCDRDFKTKKEINEFSKKLENMTLSFPTEQEELEKLVSK 706


>Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 59  KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178
           KKG + + + L ++ F++  N+DE ++S+  LD+  +  I
Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156


>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 59  KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178
           KKG + + + L ++ F++  N+DE ++S+  LD+  +  I
Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156


>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 59  KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178
           KKG + + + L ++ F++  N+DE ++S+  LD+  +  I
Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156


>Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 59  KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178
           KKG + + + L ++ F++  N+DE ++S+  LD+  +  I
Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156


>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 59  KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178
           KKG + + + L ++ F++  N+DE ++S+  LD+  +  I
Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156


>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 59  KKGTTINTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKI 178
           KKG + + + L ++ F++  N+DE ++S+  LD+  +  I
Sbjct: 117 KKGLSRSASLLKKLKFSDKKNLDELKISIFPLDIAVRKNI 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,815,404
Number of Sequences: 27780
Number of extensions: 222581
Number of successful extensions: 613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)