Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0518
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   7.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   9.6  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 128 EFQMSVNHLDLYQQSKIEKLVDKYKSV 208
           + Q ++ HL    Q   +KL +K KS+
Sbjct: 76  DVQKALRHLPRSMQDSTKKLFNKCKSI 102


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 599 LSGISNGIDQNAEFMSNENNTYSLLFWSLS 510
           +S +SN    N    +N+NN    L+++++
Sbjct: 82  ISSLSNNYISNISNYNNDNNYNKKLYYNIN 111


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 342 YLTFNFCSVFNCACVRTLIAVF 277
           YL  NF  +FN   +  L  ++
Sbjct: 294 YLVINFSGIFNLVKISPLFTIW 315


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 342 YLTFNFCSVFNCACVRTLIAVF 277
           YL  NF  +FN   +  L  ++
Sbjct: 44  YLVINFSGIFNLVKISPLFTIW 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,546
Number of Sequences: 438
Number of extensions: 2384
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)