Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0518
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen...    29   2.5  
At5g59230.1 68418.m07423 transcription factor-related low simila...    27   10.0 

>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
           hydroxypyruvate reductase identical to hydroxypyruvate
           reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
           Cell Physiol 1997 Apr;38(4):449-55)
          Length = 386

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 122 IDEFQMSVNHLDLYQQSKIEKLVDKY 199
           ++ F+M++ + DLYQ +++EK V  Y
Sbjct: 185 VEGFKMNLIYFDLYQSTRLEKFVTAY 210


>At5g59230.1 68418.m07423 transcription factor-related low
           similarity to transcription factor IIA large subunit
           [Arabidopsis thaliana] GI:2826884
          Length = 186

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 77  NTNKLCEINFNEHVNIDEFQMSVNHLDLYQQSKIEKLVDKYKSVF 211
           N   L E + +E  +ID+  M++ HL + Q  K+++  +K++  F
Sbjct: 119 NEEPLNEDDDDEEDDIDDDDMNIQHLVMCQFDKVKRSKNKWECKF 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,780,745
Number of Sequences: 28952
Number of extensions: 191637
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)