Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0517
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.70 
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    27   1.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.7  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   8.7  

>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 586 IWFFLSRVPVGLIPFVGXKFILYKSLVF 503
           IWF+  + P+  IPF+G  F  ++S  F
Sbjct: 55  IWFYYQKTPLKWIPFLGHFFNTWQSCSF 82


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -1

Query: 86  ITKPQTKRPFDGI 48
           ITKP T RPFDGI
Sbjct: 64  ITKPYTDRPFDGI 76


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 553 LIPFVGXKFILYKSLVFYLSIEALSRW 473
           + PF+  +FIL+      LS EA+  W
Sbjct: 537 IFPFIKQQFILFNDYSPMLSYEAIDYW 563


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 472 SIAKVPQSINKRL 510
           SIAKVP ++NKRL
Sbjct: 65  SIAKVPSNVNKRL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,252
Number of Sequences: 5004
Number of extensions: 42662
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)