Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0517
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1118 - 34636919-34637031,34637032-34637082,34637250-346372...    30   1.6  

>01_06_1118 -
           34636919-34637031,34637032-34637082,34637250-34637287,
           34637344-34637468,34637552-34637714,34638910-34639083,
           34639161-34639426
          Length = 309

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 403 KIMLFGEN*TRRIYYIM*LHHIISIAKVPQSINKRLNFCIK*TXNQQKE*VRRGHVKGKT 582
           K+  + E   R IY+ +   H  SIA  PQ+  K+  + ++     ++      H KGK 
Sbjct: 207 KLNEYEEALKRAIYHPLQSSHTSSIANEPQAKRKKRKYLLRGPILLKRS---NSHNKGKV 263

Query: 583 KLLFLF 600
            L+FLF
Sbjct: 264 LLMFLF 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,004,165
Number of Sequences: 37544
Number of extensions: 215211
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)