Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0517
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 596  KNNNLVFPFTCPRRTYSFCW 537
            K+N L++P+  PR T   CW
Sbjct: 1058 KSNLLIWPYPAPRPTLDLCW 1077


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
            F26H11.2b protein.
          Length = 1693

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 596  KNNNLVFPFTCPRRTYSFCW 537
            K+N L++P+  PR T   CW
Sbjct: 1058 KSNLLIWPYPAPRPTLDLCW 1077


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
            F26H11.2a protein.
          Length = 1691

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 596  KNNNLVFPFTCPRRTYSFCW 537
            K+N L++P+  PR T   CW
Sbjct: 1058 KSNLLIWPYPAPRPTLDLCW 1077


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,952
Number of Sequences: 27780
Number of extensions: 229700
Number of successful extensions: 340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)