Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0516
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 124 1e-29
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 109 3e-25
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 64 1e-11
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 64 2e-11
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 60 2e-10
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 58 1e-09
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 56 3e-09
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 53 4e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 52 5e-08
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 50 2e-07
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 50 3e-07
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 50 4e-07
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 40 3e-04
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 40 3e-04
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 39 7e-04
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 38 9e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 38 9e-04
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 38 0.002
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 31 0.14
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 31 0.18
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 30 0.31
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 30 0.31
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.72
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 0.95
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.95
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 1.7
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 2.2
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 6.7
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 8.9
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 8.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.9
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 124 bits (298), Expect = 1e-29
Identities = 55/85 (64%), Positives = 70/85 (82%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQERFQSLGVAFYRGADCCVLV+DV +F++L+SWRDEFLIQASP +P+ FPF++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILL 123
Query: 436 GNKVDLD--NRAVSVKRGQQWCQSK 504
GNKVD++ R VS + +CQ++
Sbjct: 124 GNKVDVEEQKRMVSKSKALAFCQAR 148
Score = 107 bits (256), Expect = 2e-24
Identities = 47/62 (75%), Positives = 58/62 (93%)
Frame = +2
Query: 68 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 247
M+ +KK LLKVIILG+SGVGKTS+MNQ+VN+KFS YKATIGADFLTKEV+VDD++VT+Q
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 248 IW 253
+W
Sbjct: 61 LW 62
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +3
Query: 510 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEF 623
IPYFETSAKEA+NV+ AF+T+A+ AL ++ +F
Sbjct: 151 IPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADF 188
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 109 bits (262), Expect = 3e-25
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQERFQSLG+AFYRGADCCV+V++V +F S+E+WR EFL Q S +D FPF+I+
Sbjct: 64 TAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPFIIV 122
Query: 436 GNKVDLD--NRAVSVKRGQQWCQSKNASRIL 522
GN++D D RAVS+ R +C+SK+ S ++
Sbjct: 123 GNQIDKDASKRAVSLHRALDYCKSKHGSNMI 153
Score = 107 bits (257), Expect = 1e-24
Identities = 46/62 (74%), Positives = 59/62 (95%)
Frame = +2
Query: 68 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 247
MS++K++ LKV+ILGDSGVGKT LMNQFVN+KFS +YKATIGADFLTK+V+VDD++VT+Q
Sbjct: 1 MSAQKRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQ 60
Query: 248 IW 253
+W
Sbjct: 61 LW 62
Score = 31.5 bits (68), Expect = 0.10
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 516 YFETSAKEAVNVELAFQTIARNALAQETEA-ELYNEF 623
+FE SAKE NV F+T++R AL E+ + N+F
Sbjct: 154 HFEASAKENTNVTDLFETVSRLALENESSRDDFVNDF 190
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 64.5 bits (150), Expect = 1e-11
Identities = 26/53 (49%), Positives = 40/53 (75%)
Frame = +2
Query: 95 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIW 253
K++ LG+ VGKTSL+ +F+ +F N Y+ATIG DFL+K + ++DR V +Q+W
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 65
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQERF+SL ++ R + ++V+D+T N+F + E W ++ + D+ V++
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG----DDVIIVLV 122
Query: 436 GNKVDL-DNRAVSVKRGQQ 489
GNK DL D R V+ + G++
Sbjct: 123 GNKTDLADKRQVTQEEGEK 141
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 64.1 bits (149), Expect = 2e-11
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQE+F+S+ +YRGA VLV+DVT ++F+ L SW + A P V+
Sbjct: 69 TAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMA----PSTICVVLA 124
Query: 436 GNKVDLDN-RAVSVKRGQQWCQSKNAS 513
G+K DL N R VS + ++C K+ S
Sbjct: 125 GSKSDLQNQRQVSTEEAAEFCSEKHIS 151
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Frame = +2
Query: 89 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIV----DDRIVTMQIW 253
L+K+++ G SG GK+ L+ +FV ++ +Q T+G DF ++ + V + + +QIW
Sbjct: 9 LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIW 67
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 60.5 bits (140), Expect = 2e-10
Identities = 22/55 (40%), Positives = 41/55 (74%)
Frame = +2
Query: 89 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIW 253
L K +++GDSGVGK++L+ +F +F+ + K+TIG +F T+ +++D++ + QIW
Sbjct: 10 LFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIW 64
Score = 57.2 bits (132), Expect = 2e-09
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQER++++ A+YRGA ++V+D+T ++F ++ W E A N +++
Sbjct: 66 TAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLV 121
Query: 436 GNKVDLDN-RAVSVKRGQQWCQSKNASRI 519
GNK DL + RAVS + Q + N S I
Sbjct: 122 GNKTDLLHLRAVSTEEAQAFAAENNLSFI 150
Score = 29.1 bits (62), Expect = 0.55
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 501 QERIPYFETSAKEAVNVELAFQTI 572
+ + + ETSA +A NVE AFQT+
Sbjct: 144 ENNLSFIETSAMDASNVEEAFQTV 167
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQER++SL +YR A+C ++V+D+T + + +SW E QA P+ +
Sbjct: 71 TAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA----PEGIVIALA 126
Query: 436 GNKVDL--DNRAVSVKRGQQWCQSKN 507
GNK+DL + RAV + + N
Sbjct: 127 GNKLDLAQERRAVEKADAEAYAAEAN 152
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/54 (44%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Frame = +2
Query: 95 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRI-VTMQIW 253
K+++LGDS VGK+SL+ +FV +F + ++TIGA FLT+ + +D+ V ++IW
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIW 69
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 516 YFETSAKEAVNVELAFQTIAR 578
+FETSAK A NV F IA+
Sbjct: 155 FFETSAKTAENVNELFTAIAK 175
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 56.4 bits (130), Expect = 3e-09
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQERF+++ A+YRGA +L++DVT +F ++ +W AS +N +++
Sbjct: 65 TAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS----ENVYKILI 120
Query: 436 GNKVDL-DNRAVSVKRGQ 486
GNK D D R VS ++GQ
Sbjct: 121 GNKCDCEDQRQVSFEQGQ 138
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/55 (38%), Positives = 37/55 (67%)
Frame = +2
Query: 89 LLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIW 253
L+K++++GDSGVGK+ L+ +F F+ + TIG DF + + +D + + +QIW
Sbjct: 9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIW 63
Score = 33.1 bits (72), Expect = 0.034
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 510 IPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEF 623
+ + E SAK VNV+ AF T+AR Q+ +AE NEF
Sbjct: 146 VKFLEASAKTNVNVDEAFFTLAREIKKQKIDAE--NEF 181
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/62 (35%), Positives = 39/62 (62%)
Frame = +2
Query: 68 MSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQ 247
M+ L K++++GDSGVGK+ L+ +F + ++ Y +TIG DF + ++ + V +Q
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 248 IW 253
IW
Sbjct: 61 IW 62
Score = 50.4 bits (115), Expect = 2e-07
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQERF+++ ++YRGA ++V+DVT ++F +++ W E A + +++
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA----VEGVNRLLV 119
Query: 436 GNKVDL-DNRAVSVKRGQQWCQSKN 507
GNK D+ D + V +++ S N
Sbjct: 120 GNKSDMVDKKVVEYSVAKEFADSLN 144
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 510 IPYFETSAKEAVNVELAFQTIAR 578
IP+ ETSAK++ NVE AF T++R
Sbjct: 145 IPFLETSAKDSTNVEQAFLTMSR 167
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 52.4 bits (120), Expect = 5e-08
Identities = 27/74 (36%), Positives = 41/74 (55%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQE+ L +Y C +++FDVT+ T+K++ W + + R +N P V+
Sbjct: 65 TAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV-----RVCENIPIVLC 119
Query: 436 GNKVDLDNRAVSVK 477
GNKVD+ R V K
Sbjct: 120 GNKVDVKERKVKAK 133
Score = 35.5 bits (78), Expect = 0.006
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 95 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGAD 199
K++++GD G GKT+ + + + +F +Y AT+G +
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVE 45
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +2
Query: 62 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVT 241
C S +K + K++ILGD GKTSL+N F F Y+ TI +++ ++ VD +
Sbjct: 4 CFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYI-HDIFVDGNSIE 62
Query: 242 MQIWVLLAKNGSNRLE*LS 298
+ +W + ++L LS
Sbjct: 63 LSLWDTAGQEEYDQLRSLS 81
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 250 MGTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFV 429
+ TAGQE + ++ + R + +LV+++T+ ++F + ++ + L +D D FP V
Sbjct: 61 LDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL---RVKDKDTFPVV 117
Query: 430 ILGNKVDLD-NRAVSVKRGQQWCQS 501
++ NK DL+ R VS G+Q +S
Sbjct: 118 LVANKCDLEAERVVSRAEGEQLAKS 142
Score = 35.1 bits (77), Expect = 0.008
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 95 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTK 211
K++++GD GVGK++L Q + F ++Y TI + K
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKK 48
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 516 YFETSAKEAVNVELAFQTIAR 578
Y ETSAK +NVE AF ++ R
Sbjct: 147 YVETSAKLRLNVEEAFYSLVR 167
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 49.6 bits (113), Expect = 4e-07
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 77 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWV 256
+ + +KV ++GDS +GKTSLM +V F + T+G +F+ K + + + +T IW
Sbjct: 6 KNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWD 65
Query: 257 L 259
L
Sbjct: 66 L 66
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 39.9 bits (89), Expect = 3e-04
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVIL 435
TAGQ+ + L G VLV+ +T+ ++F+ ++ RD+ L + + P V++
Sbjct: 61 TAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKIL---NHTGTEWVPIVVV 117
Query: 436 GNKVDLD-NRAVSVKRGQ 486
GNK DL RAV+ + G+
Sbjct: 118 GNKSDLHMQRAVTAEEGK 135
Score = 30.3 bits (65), Expect = 0.24
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 95 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADF 202
++ +LG VGK+SL Q+V F Y TI F
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF 43
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 39.9 bits (89), Expect = 3e-04
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 65 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI-VDDRIVT 241
K S+ + K++++GD G GKT L+ F + F +Y T+ +++T + +++
Sbjct: 6 KSGSKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIE 65
Query: 242 MQIWVLLAKNGSNRLE*LS 298
+ +W + +RL LS
Sbjct: 66 LALWDTAGQEEYDRLRPLS 84
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 38.7 bits (86), Expect = 7e-04
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 83 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWVLL 262
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R V + +W
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTA 62
Query: 263 AKNGSNRLE*LS 298
+ +RL LS
Sbjct: 63 GQEDYDRLRPLS 74
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 38.3 bits (85), Expect = 9e-04
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = +2
Query: 83 KLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWVLL 262
+L K++I+GD GKT L+ F F Y T+ +++ +V VD R + + +W
Sbjct: 4 ELRRKLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTA 62
Query: 263 AKNGSNRLE*LS 298
+ +RL LS
Sbjct: 63 GQEDYDRLRPLS 74
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVI 432
TAGQE + L Y + ++ F V AP + ++ E W E L S N P ++
Sbjct: 61 TAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-----NLPILL 115
Query: 433 LGNKVDLDN 459
+G KVDL N
Sbjct: 116 VGCKVDLRN 124
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 38.3 bits (85), Expect = 9e-04
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +2
Query: 95 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWVLLAKNG 274
K++++GD GKTSL++ F F +Y T+ ++++ + VD + V + +W +
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEE 68
Query: 275 SNRLE*LS 298
RL +S
Sbjct: 69 YERLRPMS 76
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 92 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWVLLAKN 271
+K +++GD VGKT L+ + KF + Y T+ D V++ D T+ ++ +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV-FDNYAVTVMIGDEPYTLGLFDTAGQE 62
Query: 272 GSNRLE*LS 298
+RL LS
Sbjct: 63 DYDRLRPLS 71
Score = 34.7 bits (76), Expect = 0.011
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 256 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVI 432
TAGQE + L Y D ++ F VT+P +F+++ E W E + P P +I
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPE-VHHHCP----GVPCLI 112
Query: 433 LGNKVDL-DNRAVSVKRGQQ 489
+G ++DL D+ +V K +Q
Sbjct: 113 VGTQIDLRDDPSVQQKLARQ 132
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 65 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNK 160
K SS+K + L ++++GD G+G+T+ +N K
Sbjct: 44 KKSSKKGIPLNLMVVGDVGLGRTAFINTLCEK 75
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 30.7 bits (66), Expect = 0.18
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 77 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADF 202
R+ V++LG+SG GK++L+N +N+ + ++ DF
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDF 132
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 62 CKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFS 169
CK RK + V ILG S GK+SL+N N++ S
Sbjct: 232 CKEVLRKGI--NVAILGPSNAGKSSLINLLANRRIS 265
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 29.9 bits (64), Expect = 0.31
Identities = 13/51 (25%), Positives = 29/51 (56%)
Frame = +2
Query: 77 RKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDD 229
R + + +I++G+S +GKT+ +N F+ +N ++ DF+ + + D
Sbjct: 114 RNGIDINLIVVGESSLGKTTFVNSFLQSNDTN-FRPKKTMDFVEHKATLSD 163
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 28.7 bits (61), Expect = 0.72
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -2
Query: 285 KRLEPFLASSTHICIVTILSSTITSFVRKSAPIVALYWLENFL 157
KRL+P T I +V++++ T+ + + +API YW + F+
Sbjct: 366 KRLKP-----TKIMVVSMIAFTVGTILIATAPIHQTYWAQTFV 403
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.95
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 65 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGAD 199
K+ SR + +++ G+SG+GKT+ F N FS K+ +G +
Sbjct: 20 KIVSRNGVAFTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE 60
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 0.95
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 92 LKVIILGDSGVGKTSLMNQFVNK 160
++V+I GD GVGK+SL++ + +
Sbjct: 4 VRVVICGDQGVGKSSLISALIQE 26
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 65 KMSSRKKLLLKVIILGDSGVGKTSLMNQFVN 157
K+S + + ++G GKT+L++ F+N
Sbjct: 413 KVSKYDRNVFLCFVVGSKSCGKTALLSSFIN 443
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 53 KLLCKMSSRKKLL--LKVIILGDSGVGKTSLMNQFVNK 160
K L S++KKL L V ++G VGK+S++N VN+
Sbjct: 255 KSLKSYSAKKKLKSSLTVGVIGYPNVGKSSVINALVNR 292
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 59 LCKMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEV 217
+ + K+ ++V++LG GKT+++ +N+ N+ T G T EV
Sbjct: 6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDV-NEVSPTFGFQIRTLEV 57
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 92 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWVLLAKN 271
+KV++LG GKT++M Q + +S + + + V++ + I++ +L A +
Sbjct: 75 IKVLLLGAGDSGKTTIMKQ-MRLLYSPGFSQVVRKQY---RVMIFENIISSLCLLLEAMD 130
Query: 272 GSN 280
SN
Sbjct: 131 NSN 133
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 53 KLLCKMSSRKKLLLKVIILGDSGV 124
KL+C S+K L K+++ GD+ V
Sbjct: 525 KLVCDFESKKPTLEKLLVWGDNHV 548
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 8.9
Identities = 7/21 (33%), Positives = 18/21 (85%)
Frame = +2
Query: 98 VIILGDSGVGKTSLMNQFVNK 160
++++G++G GK++ + QF+N+
Sbjct: 115 IVVVGETGSGKSTQIPQFLNE 135
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +2
Query: 98 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI 220
+++ G+SG GKT + + + T+G+ + +++I
Sbjct: 166 ILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQII 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,655
Number of Sequences: 5004
Number of extensions: 58289
Number of successful extensions: 232
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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