Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0516
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.15 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   2.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   4.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 333 RNCPQHV*VLRELERRIPD 389
           +N PQH  +LREL ++IPD
Sbjct: 376 QNHPQHPDILRELLKKIPD 394


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 279 LEPFLASSTHICIVTILS-STITSF 208
           L PFL+SS    IVT L+ ST+  F
Sbjct: 2   LSPFLSSSVSTVIVTALTPSTLGRF 26


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 599 GFLCQCVACYCLKS*LYIDSFFGTCLKIRDA 507
           G     +    L S +++ SFFG C  IR++
Sbjct: 47  GLAFPSITLIVLGSIIFVISFFGCCGAIRES 77


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 87  SFFREDILHNNFYTMMKN 34
           ++F ED+  N+FY M+ +
Sbjct: 220 NYFTEDVGLNHFYFMLNH 237


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 87  SFFREDILHNNFYTMMKN 34
           ++F ED+  N+FY M+ +
Sbjct: 220 NYFTEDVGLNHFYFMLNH 237


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 267 LASSTHICIVTILSSTITS 211
           L   TH+C  ++L    TS
Sbjct: 386 LMQETHVCFFSLLRDAFTS 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,479
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)